Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   PT256_RS03535 Genome accession   NZ_CP117817
Coordinates   695211..695918 (-) Length   235 a.a.
NCBI ID   WP_072356081.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5573     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 690211..700918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT256_RS03520 (PT256_03520) - 693086..693598 (-) 513 WP_061784175.1 pilus assembly protein -
  PT256_RS03525 (PT256_03525) - 693595..694662 (-) 1068 WP_061784176.1 PilW family protein -
  PT256_RS03530 (PT256_03530) pilV 694659..695198 (-) 540 WP_061722134.1 type IV pilus modification protein PilV -
  PT256_RS03535 (PT256_03535) fimT 695211..695918 (-) 708 WP_072356081.1 GspH/FimT family pseudopilin Machinery gene
  PT256_RS03540 (PT256_03540) - 696142..697002 (-) 861 WP_061363866.1 polysaccharide deacetylase family protein -
  PT256_RS03545 (PT256_03545) - 697179..698528 (-) 1350 WP_072356083.1 lpg0634 family Dot/Icm T4SS effector -
  PT256_RS03550 (PT256_03550) - 698818..700299 (+) 1482 WP_027220495.1 glycosyltransferase family 39 protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24851.44 Da        Isoelectric Point: 7.0381

>NTDB_id=787678 PT256_RS03535 WP_072356081.1 695211..695918(-) (fimT) [Legionella pneumophila strain D5573]
MNKVITESQKFTLRNLANMLFCVDGSVLPAQSNIAQKIQTQGIMYNDLCKDSFDTEAPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=787678 PT256_RS03535 WP_072356081.1 695211..695918(-) (fimT) [Legionella pneumophila strain D5573]
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCGCAACTTAGCTAATATGTTATTTTGCGTTGATGGTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAGATACAAACGCAAGGCATAATGTACAATGATCTTTGTAAAGACAGCTTCG
ATACTGAGGCCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATCATCTTAACTTTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTGTGCCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACACTT
TTAAAATCGCACCAGACTTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGAAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCTGGAACAACACCCGGTCAAGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)

Type II transport protein GspH (GspH)

(106-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

98.298

100

0.983