Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   Q5417_RS28035 Genome accession   NZ_CP130750
Coordinates   6034204..6034728 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain AU10241     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6029204..6039728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5417_RS28020 (Q5417_28020) aroB 6030320..6031426 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  Q5417_RS28025 (Q5417_28025) aroK 6031476..6031994 (-) 519 WP_003095833.1 shikimate kinase AroK -
  Q5417_RS28030 (Q5417_28030) pilQ 6032006..6034150 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  Q5417_RS28035 (Q5417_28035) comL/pilP 6034204..6034728 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Q5417_RS28040 (Q5417_28040) pilO 6034725..6035348 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q5417_RS28045 (Q5417_28045) pilN 6035345..6035941 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  Q5417_RS28050 (Q5417_28050) pilM 6035941..6037005 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Q5417_RS28055 (Q5417_28055) - 6037190..6039661 (+) 2472 WP_061189531.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=787679 Q5417_RS28035 WP_003095836.1 6034204..6034728(-) (comL/pilP) [Pseudomonas aeruginosa strain AU10241]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=787679 Q5417_RS28035 WP_003095836.1 6034204..6034728(-) (comL/pilP) [Pseudomonas aeruginosa strain AU10241]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362