Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PSR56_RS20780 Genome accession   NZ_CP117689
Coordinates   3943579..3944820 (-) Length   413 a.a.
NCBI ID   WP_048019864.1    Uniprot ID   -
Organism   Priestia megaterium strain GEB3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3938579..3949820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR56_RS20760 (PSR56_20760) spoVS 3939138..3939398 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  PSR56_RS20765 (PSR56_20765) - 3939622..3940419 (-) 798 WP_028411380.1 TIGR00282 family metallophosphoesterase -
  PSR56_RS20770 (PSR56_20770) rny 3940501..3942060 (-) 1560 WP_013058803.1 ribonuclease Y -
  PSR56_RS20775 (PSR56_20775) recA 3942342..3943379 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  PSR56_RS20780 (PSR56_20780) cinA 3943579..3944820 (-) 1242 WP_048019864.1 competence/damage-inducible protein A Machinery gene
  PSR56_RS20785 (PSR56_20785) pgsA 3944837..3945421 (-) 585 WP_028411382.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PSR56_RS20790 (PSR56_20790) - 3945566..3946543 (-) 978 WP_223268970.1 helix-turn-helix domain-containing protein -
  PSR56_RS20795 (PSR56_20795) - 3946556..3947347 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  PSR56_RS20800 (PSR56_20800) - 3947561..3947821 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  PSR56_RS20805 (PSR56_20805) ymfI 3947887..3948612 (-) 726 WP_048019862.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45041.18 Da        Isoelectric Point: 5.0876

>NTDB_id=786994 PSR56_RS20780 WP_048019864.1 3943579..3944820(-) (cinA) [Priestia megaterium strain GEB3]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIVTAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSTVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YEAYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEVVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVHIGVAYKDQTPQVYSLQLSGRRQGIRSRTV
NYGCHYVLKTIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=786994 PSR56_RS20780 WP_048019864.1 3943579..3944820(-) (cinA) [Priestia megaterium strain GEB3]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGGCAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACAGTAGTAGGAGATAATGCACAGCGCTTGAAAGAAGTGA
TTGTTACAGCTCAAACACGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGTTGACAACAAATGCGGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTACTTGAAGGTTCGACAGTGCTCCCTAATGATTACGGAA
TGGCTCCAGGTATGGGGCTTACAGTAGAGGGAAAACACTATATGCTATTCCCAGGGCCGCCAAAAGAGCTCTATCCAATG
TATGAAGCATATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGTTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACAAACCCGACGATTGCACCGCTTG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGTTTGACGATTGCTTCAGCCGAAAGTTTAACCGGCGGGTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGTTGTTAAAGGCAGCCTGGTAGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGTTTTACGGGTGTAGCTGGACCCTCTAAACAAGAAGGACACCCTGTAGGAACAGTGCATATAGGGG
TCGCTTATAAGGATCAAACTCCTCAAGTTTACAGTTTGCAGCTATCTGGAAGGCGCCAAGGAATTCGTTCACGAACGGTT
AATTACGGCTGTCATTACGTATTGAAGACGATAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.268

99.274

0.588
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus mitis SK321

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.429

100

0.472
  cinA Streptococcus pneumoniae Rx1

45.952

100

0.467
  cinA Streptococcus pneumoniae R6

45.952

100

0.467
  cinA Streptococcus pneumoniae D39

45.714

100

0.465
  cinA Streptococcus mutans UA159

44.819

100

0.45