Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   Q5R05_RS07270 Genome accession   NZ_CP130703
Coordinates   1426115..1426717 (-) Length   200 a.a.
NCBI ID   WP_014974736.1    Uniprot ID   K0DDP6
Organism   Leuconostoc carnosum strain AMS1     
Function   degradation of ComX; require for competence development (at the early growth phase); repress competence development (at the mid-logarithmic growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 1421115..1431717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS07250 (Q5R05_07250) - 1421769..1422305 (-) 537 WP_135197702.1 YqeG family HAD IIIA-type phosphatase -
  Q5R05_RS07255 (Q5R05_07255) - 1422455..1423150 (-) 696 WP_223823022.1 peptidoglycan-binding protein -
  Q5R05_RS07260 (Q5R05_07260) - 1423491..1424729 (-) 1239 WP_135198187.1 PTS sugar transporter subunit IIC -
  Q5R05_RS07265 (Q5R05_07265) - 1424845..1425840 (-) 996 WP_014974735.1 D-2-hydroxyacid dehydrogenase -
  Q5R05_RS07270 (Q5R05_07270) clpP 1426115..1426717 (-) 603 WP_014974736.1 ATP-dependent Clp protease proteolytic subunit Regulator
  Q5R05_RS07275 (Q5R05_07275) whiA 1426897..1427841 (-) 945 WP_014974737.1 DNA-binding protein WhiA -
  Q5R05_RS07280 (Q5R05_07280) yvcK 1427841..1428815 (-) 975 WP_305068428.1 gluconeogenesis factor YvcK family protein -
  Q5R05_RS07285 (Q5R05_07285) - 1429055..1429177 (+) 123 WP_172600981.1 putative metal homeostasis protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21586.75 Da        Isoelectric Point: 4.7491

>NTDB_id=786642 Q5R05_RS07270 WP_014974736.1 1426115..1426717(-) (clpP) [Leuconostoc carnosum strain AMS1]
MWPGVIEQTANGRESYDLPSRLLKDRIVLVQGEIEDSMATSIAAQLLFLEAQDPTKEISMYINSPGGSVTAGLSITDTMN
FIKAPVTTIVMGLAASMGTIIASSGEKGHRFMLPNAEYLIHQPMGGAGGGTQQTDMAIIAKQLTKTREKLNKILANASGK
DLETIAHDTERDYWMSAEETLEYGLIDGILTKAGEKPVIK

Nucleotide


Download         Length: 603 bp        

>NTDB_id=786642 Q5R05_RS07270 WP_014974736.1 1426115..1426717(-) (clpP) [Leuconostoc carnosum strain AMS1]
ATGTGGCCAGGAGTTATTGAACAAACTGCTAATGGACGTGAAAGCTATGATTTACCTTCACGTTTGCTAAAGGATCGTAT
TGTTTTGGTTCAAGGCGAAATTGAAGATAGTATGGCGACATCAATTGCTGCGCAATTACTATTTTTGGAAGCGCAAGATC
CAACAAAAGAAATTTCAATGTATATTAATTCACCAGGGGGCTCAGTTACAGCGGGACTATCAATTACTGATACAATGAAT
TTCATTAAGGCACCGGTAACAACAATTGTTATGGGATTAGCTGCTTCAATGGGAACTATCATTGCTAGTTCAGGTGAGAA
GGGGCATCGGTTTATGTTGCCCAATGCCGAATACCTGATTCACCAACCAATGGGTGGTGCTGGTGGCGGTACGCAACAGA
CTGATATGGCAATTATTGCTAAGCAGTTGACTAAGACACGTGAAAAACTAAATAAGATTCTAGCAAATGCTTCAGGGAAA
GACTTAGAAACAATCGCGCATGACACAGAGCGTGATTATTGGATGAGTGCTGAAGAAACGTTGGAATATGGTTTGATTGA
TGGTATTTTAACAAAAGCCGGCGAGAAACCAGTTATTAAGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(12-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DDP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.