Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PGW97_RS16190 Genome accession   NZ_CP117517
Coordinates   3532035..3533129 (-) Length   364 a.a.
NCBI ID   WP_273858008.1    Uniprot ID   -
Organism   Photobacterium sp. GSS17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3527035..3538129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW97_RS16160 hemF 3527519..3528424 (-) 906 WP_273858003.1 oxygen-dependent coproporphyrinogen oxidase -
  PGW97_RS16165 tsaC 3528431..3528988 (-) 558 WP_207103413.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  PGW97_RS16170 purE 3529191..3529682 (+) 492 WP_047887463.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PGW97_RS16175 - 3529679..3530794 (+) 1116 WP_047887464.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PGW97_RS16180 - 3530916..3531524 (-) 609 WP_273858005.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PGW97_RS16185 - 3531559..3532032 (-) 474 WP_047887466.1 DUF494 family protein -
  PGW97_RS16190 dprA 3532035..3533129 (-) 1095 WP_273858008.1 DNA-processing protein DprA Machinery gene
  PGW97_RS16195 - 3533148..3534206 (-) 1059 WP_273858009.1 LysM peptidoglycan-binding domain-containing protein -
  PGW97_RS16200 def 3534494..3535012 (+) 519 WP_047887469.1 peptide deformylase -
  PGW97_RS16205 fmt 3535041..3535991 (+) 951 WP_273858011.1 methionyl-tRNA formyltransferase -
  PGW97_RS16210 rsmB 3536125..3537408 (+) 1284 WP_273858012.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38903.70 Da        Isoelectric Point: 6.7691

>NTDB_id=786196 PGW97_RS16190 WP_273858008.1 3532035..3533129(-) (dprA) [Photobacterium sp. GSS17]
MTALVDWLVLASAPGLGGVRISRILEHVTPSSLRAMSAEELTGIGMTPRQVSHFRQPPMAKIDRCLRWASQPGQTILTLD
SSHYPALLKEIASPPPLLFVRGEPHWLLQPQLAIVGSRSASIDGREAAYEFAAALVAAEYVVTSGLALGVDGQAHYGALK
NGGATVAVLGSGLDRIYPAKHRELASLITQQGALVSEFWPDESPRPQNFPRRNRVISGLSVGVLVIEAAQKSGSLITARY
ALEQGREVFALPGPIHYPGSRGCHALIKNGAKLVETPVDIFEEVGALTSCVKNSHSDESLAQPENEKLPFPALLANVGSE
ATPVDVVAERSGQPVQEVMMQLLELELLGMVTAVPGGYIRARRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=786196 PGW97_RS16190 WP_273858008.1 3532035..3533129(-) (dprA) [Photobacterium sp. GSS17]
ATGACGGCATTAGTTGATTGGTTGGTTCTGGCGTCTGCACCGGGTCTGGGCGGCGTCAGGATCAGCCGTATCTTGGAACA
TGTGACTCCGTCATCCCTGCGTGCGATGTCGGCCGAAGAGTTGACGGGCATCGGTATGACTCCCCGCCAAGTGAGTCACT
TTCGCCAGCCTCCGATGGCAAAAATTGATCGTTGTCTGCGTTGGGCCAGCCAGCCGGGCCAGACTATACTCACCTTAGAT
TCTTCTCATTACCCTGCTTTACTTAAAGAAATCGCTTCACCTCCTCCTTTATTGTTTGTCCGGGGAGAGCCGCACTGGTT
GCTGCAGCCACAGCTGGCTATTGTCGGCAGCCGCTCAGCCAGTATCGACGGTCGGGAAGCGGCTTATGAATTTGCGGCTG
CACTGGTAGCGGCCGAGTATGTGGTGACCAGCGGATTGGCGTTAGGGGTGGATGGTCAGGCGCATTACGGAGCGCTGAAA
AATGGCGGGGCCACAGTAGCGGTACTGGGCTCGGGCCTTGATCGGATCTACCCGGCCAAACACCGTGAGCTGGCGAGCCT
GATTACGCAGCAAGGGGCGCTGGTCTCTGAGTTCTGGCCGGATGAATCGCCTCGGCCGCAGAACTTTCCGCGTCGCAACC
GAGTGATCAGCGGACTCTCGGTCGGCGTACTGGTGATAGAGGCGGCGCAGAAAAGTGGCTCGCTGATTACGGCGCGGTAT
GCCTTAGAGCAAGGGCGGGAAGTCTTTGCCCTGCCCGGCCCGATTCATTATCCCGGGAGCCGAGGCTGCCATGCCCTGAT
AAAAAATGGTGCCAAACTGGTCGAAACACCGGTCGATATCTTTGAAGAAGTCGGGGCGCTGACAAGCTGCGTAAAAAATA
GCCATTCGGATGAATCGCTCGCACAACCTGAAAATGAAAAATTGCCATTTCCAGCGCTGTTGGCTAACGTAGGCAGTGAG
GCAACACCCGTAGATGTAGTTGCTGAGCGCAGTGGGCAACCTGTTCAGGAAGTCATGATGCAGTTACTTGAACTGGAACT
GCTCGGGATGGTCACTGCTGTACCAGGTGGCTATATCAGAGCGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

56.077

99.451

0.558
  dprA Vibrio cholerae strain A1552

51.093

100

0.514
  dprA Glaesserella parasuis strain SC1401

46.381

100

0.475
  dprA Legionella pneumophila strain ERS1305867

49.186

84.341

0.415
  dprA Haemophilus influenzae Rd KW20

44.444

91.484

0.407
  dprA Neisseria gonorrhoeae strain FA1090

41.379

87.637

0.363
  dprA Neisseria meningitidis strain C311

41.121

88.187

0.363
  dprA Neisseria meningitidis MC58

41.121

88.187

0.363