Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PSH69_RS01940 Genome accession   NZ_CP117461
Coordinates   429807..431882 (+) Length   691 a.a.
NCBI ID   WP_305410876.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1740     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424807..436882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH69_RS01920 (PSH69_01920) comM 427019..428083 (+) 1065 WP_305410874.1 pilus assembly protein PilM Machinery gene
  PSH69_RS01925 (PSH69_01925) - 428083..428649 (+) 567 WP_019581856.1 PilN domain-containing protein -
  PSH69_RS01930 (PSH69_01930) pilO 428646..429269 (+) 624 WP_019581857.1 type 4a pilus biogenesis protein PilO -
  PSH69_RS01935 (PSH69_01935) - 429266..429793 (+) 528 WP_305410875.1 pilus assembly protein PilP -
  PSH69_RS01940 (PSH69_01940) pilQ 429807..431882 (+) 2076 WP_305410876.1 type IV pilus secretin PilQ Machinery gene
  PSH69_RS01945 (PSH69_01945) aroK 431887..432405 (+) 519 WP_019581860.1 shikimate kinase AroK -
  PSH69_RS01950 (PSH69_01950) aroB 432556..433656 (+) 1101 WP_018928613.1 3-dehydroquinate synthase -
  PSH69_RS01955 (PSH69_01955) - 433667..435274 (+) 1608 WP_305410877.1 AAA family ATPase -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74761.92 Da        Isoelectric Point: 5.7805

>NTDB_id=785717 PSH69_RS01940 WP_305410876.1 429807..431882(+) (pilQ) [Pseudomonas sp. FP1740]
MNRIFSTFGISLWIAFLSPLVQAANLKALDVAALPGDRVELKLSFDGPPPQPHGYTTEQPARIALDLPGVTSQLTNKSRD
LGGGNARSATVVEAKDRTRLIIGLTQLTPYSARVEGNNLFVVVGQAAGNKASKPIASAPRAATAVPAPARASAPVGKAIR
GVDFQRGTQGEGNVVIDLSDPSIAPDIQERDGKIIVGFTKTQLPERLRVRLDVKDFATPVQFVNASATGDRAIISIEPSG
AFDYSTYQTDNKLTVSIRPMTVDDLQKRNAERFAYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KVDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSVQKGNWNGSGVNG
SSTTVGTPGSTSTNSPFVDLGTSSNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQ
EASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNT
QSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=785717 PSH69_RS01940 WP_305410876.1 429807..431882(+) (pilQ) [Pseudomonas sp. FP1740]
ATGAACAGGATTTTCTCAACCTTCGGTATTTCGCTATGGATAGCGTTTCTGTCGCCGTTGGTACAGGCGGCCAACCTCAA
AGCGCTGGATGTCGCCGCGCTGCCTGGTGACCGTGTCGAGCTGAAGTTGTCGTTCGACGGGCCGCCACCGCAGCCTCATG
GCTATACGACTGAGCAGCCTGCGCGGATTGCGCTGGATTTGCCGGGAGTTACCAGCCAGCTGACGAACAAGAGTCGTGAC
CTGGGCGGCGGCAATGCCCGCAGCGCCACGGTGGTGGAAGCCAAGGACCGCACGCGGCTGATCATCGGTCTGACTCAACT
GACTCCGTATAGCGCACGTGTCGAAGGCAACAACCTGTTTGTGGTTGTCGGGCAGGCGGCCGGTAACAAGGCGTCCAAAC
CGATTGCCAGCGCACCACGCGCGGCCACGGCGGTACCCGCGCCCGCCAGAGCCAGTGCTCCCGTGGGCAAGGCTATTCGT
GGCGTGGATTTCCAGCGCGGCACCCAGGGTGAAGGCAACGTGGTTATCGATCTGTCGGATCCGTCCATCGCCCCGGACAT
TCAGGAACGCGATGGCAAGATCATCGTCGGCTTCACCAAAACCCAATTGCCTGAGCGGTTGCGCGTCCGTCTCGACGTCA
AGGATTTCGCTACCCCGGTGCAGTTCGTCAACGCCAGCGCCACGGGCGACCGGGCCATCATCAGCATCGAGCCCAGCGGC
GCCTTCGATTATTCGACCTACCAGACCGATAACAAACTGACCGTCAGCATCCGGCCGATGACTGTCGATGACTTGCAAAA
ACGCAACGCCGAACGTTTTGCCTACAGCGGCGAAAAGCTCTCGTTGAATTTCCAGGACATCGATGTGCGCTCGGTGCTGC
AACTGATCGCCGATTTCACCAACCTCAACCTGGTGGCCAGTGACACGGTGCAGGGTGGCATCACGTTGCGCCTGCAGAAT
GTGCCGTGGGATCAGGCGCTGGACCTGGTGTTGAAAACCAAAGGCCTGGATAAGCGCAAGATTGGCAATGTGTTGCTGGT
GGCGCCGGCCGATGAAATCGCCGCCCGGGAGCGTCAAGAGCTGGAGTCGCAGAAGCAAATCGCCGAACTGGCGCCTCTGC
GTCGCGAACTGTTGCAGGTCAACTACGCCAAGGCTGCCGATATCGCCAAGCTGTTCCAGTCAGTGACCAGTGCCGAGGCG
AAAGTCGACGAGCGCGGTTCAATCACTGTCGATGAGCGGACCAACAACATCATTGCCTACCAGACCCAGGACCGCCTCGA
CGAATTGCGTCGCATCGTTGCACAGCTGGATATTCCAGTGCGTCAGGTGATGATCGAGGCGCGCATCGTTGAGGCCAACG
TCGATTACGACAAAAGCCTCGGCGTGCGCTGGGGCGGTTCAGTGCAGAAGGGTAATTGGAACGGCTCCGGGGTCAACGGC
TCTTCGACCACCGTCGGCACGCCGGGCAGCACCAGCACCAACTCGCCGTTCGTCGACCTCGGGACTTCCTCCAACACCTC
GGGGATCGGTATCGCCTTCATTACCGACAATGTGCTGCTGGACCTTGAGCTGACGGCCATGGAAAAAACCGGCAACGGGG
AAATCGTCTCGCAGCCCAAGGTGGTCACGTCCGACAAGGAAACCGCGAAAATCCTCAAGGGCACCGAAATCCCCTATCAG
GAAGCCAGCTCCAGCGGTGCCACTTCGGTGTCGTTCAAGGAGGCCTCGCTGTCCCTGGAAGTGACGCCGCAGATCACCCC
GGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTACCGCCGA
TCAAGAAAAACGAGGTCAACGCCAAGGTATTGGTCAACGACGGCGAGACCATCGTGATTGGTGGGGTTTTCTCAAATACT
CAGAGCAAGGTTGTAGATAAGGTGCCATTTCTCGGTGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGACGTGGTTTC
GGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAACAATCAGGCGATTGCTGTGAGTCATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(526-682)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

AMIN domain (AMIN)

(37-122)

Secretin and TonB N terminus short domain (STN)

(303-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.969

100

0.754
  comQ Acinetobacter baylyi ADP1

41.265

100

0.434
  pilQ Acinetobacter baumannii strain A118

39.177

100

0.427
  pilQ Acinetobacter baumannii D1279779

39.177

100

0.427
  pilQ Legionella pneumophila strain Lp02

37.814

97.974

0.37
  pilQ Legionella pneumophila strain ERS1305867

37.814

97.974

0.37