Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH69_RS01920 Genome accession   NZ_CP117461
Coordinates   427019..428083 (+) Length   354 a.a.
NCBI ID   WP_305410874.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1740     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422019..433083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH69_RS01910 (PSH69_01910) - 422961..424229 (+) 1269 WP_204123936.1 malic enzyme-like NAD(P)-binding protein -
  PSH69_RS01915 (PSH69_01915) - 424363..426801 (-) 2439 WP_370695247.1 penicillin-binding protein 1A -
  PSH69_RS01920 (PSH69_01920) comM 427019..428083 (+) 1065 WP_305410874.1 pilus assembly protein PilM Machinery gene
  PSH69_RS01925 (PSH69_01925) - 428083..428649 (+) 567 WP_019581856.1 PilN domain-containing protein -
  PSH69_RS01930 (PSH69_01930) pilO 428646..429269 (+) 624 WP_019581857.1 type 4a pilus biogenesis protein PilO -
  PSH69_RS01935 (PSH69_01935) - 429266..429793 (+) 528 WP_305410875.1 pilus assembly protein PilP -
  PSH69_RS01940 (PSH69_01940) pilQ 429807..431882 (+) 2076 WP_305410876.1 type IV pilus secretin PilQ Machinery gene
  PSH69_RS01945 (PSH69_01945) aroK 431887..432405 (+) 519 WP_019581860.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38110.48 Da        Isoelectric Point: 4.6719

>NTDB_id=785716 PSH69_RS01920 WP_305410874.1 427019..428083(+) (comM) [Pseudomonas sp. FP1740]
MLGLFNKKTNALLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPASAVVEKNIAELEGVGQALARVLLKAKTSQRNVAV
AVAGSAVITKTIEMDAGLSDEEMENQLKIEADQYIPYPLDEVAIDFEVQGASVRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQEHLTVAVVDIGATMTTLSVLNNGRIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFRDALVQQVSRSLQFFFASGQYSSVDHILLAGGTASVPGLDRLIEQRLGTPTQVANP
FSDMTLSSRVNASALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=785716 PSH69_RS01920 WP_305410874.1 427019..428083(+) (comM) [Pseudomonas sp. FP1740]
GTGCTAGGACTCTTCAATAAAAAAACCAATGCGCTTCTGGGGATCGACATCAGCTCTACGTCGGTGAAGCTGTTGGAGTT
AAGCCGCCAAGGCGACCGTTATCGGGTCGAGGCCTATGCGGTCGAGCCGCTGCCCGCCAGTGCCGTGGTCGAAAAAAATA
TTGCCGAGCTCGAAGGCGTGGGGCAGGCCCTTGCGCGCGTGCTGCTCAAGGCCAAAACCAGCCAGAGGAACGTCGCCGTG
GCGGTCGCCGGCTCGGCGGTGATCACCAAGACTATCGAGATGGACGCCGGTCTTTCCGACGAGGAGATGGAAAACCAGCT
GAAGATCGAAGCTGATCAGTACATCCCGTATCCGCTGGATGAAGTGGCGATCGACTTCGAAGTGCAAGGCGCGTCAGTGC
GCAACCCCGAGCGGGTCAATGTGCTGCTGGCCGCCTGTCGCAAGGAAAACGTCGAGGTTCGTGAAGCGGCCCTGGCCCTG
GCCGGGCTGACCGCGCGAGTGGTCGATGTCGAGGCCTATGCCCTGGAGCGATCGTTCGGCTTGCTGGCAACCCAGCTGGC
CGCCTCTCAGGAGCATCTGACCGTGGCGGTGGTCGATATCGGCGCCACCATGACCACCCTGAGTGTGTTGAACAATGGGC
GGATCATCTACACCCGCGAACAATTGTTCGGCGGTCGACAACTGACGGAAGAAATCCAGCGCCGTTATGGCCTGACGGTC
GAGCAGGCAGGGTTGGCGAAGAAGCAGGGCGGCTTGCCGGACGATTACGTCAGTGAGGTCTTGCAGCCGTTTCGGGATGC
GTTGGTGCAACAAGTATCGCGCTCACTGCAGTTTTTCTTTGCCTCCGGCCAATACAGCTCGGTCGATCACATTCTCCTGG
CCGGCGGCACTGCCTCGGTCCCAGGGCTGGATCGATTGATCGAGCAGCGCCTGGGTACGCCGACCCAGGTCGCTAACCCA
TTCTCCGACATGACCCTGAGCAGCAGGGTCAACGCCAGTGCCCTGGCGAGCGATGCGCCGGCACTGATGATCGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

53.955

100

0.54
  pilM Legionella pneumophila strain ERS1305867

48.588

100

0.486