Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH67_RS04670 Genome accession   NZ_CP117450
Coordinates   1033373..1034581 (-) Length   402 a.a.
NCBI ID   WP_305389665.1    Uniprot ID   -
Organism   Pseudomonas lurida strain FP2043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1028373..1039581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH67_RS04630 (PSH67_04630) - 1029291..1029464 (-) 174 WP_016976295.1 DUF3094 family protein -
  PSH67_RS04635 (PSH67_04635) - 1029519..1030148 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  PSH67_RS04640 (PSH67_04640) - 1030252..1030719 (+) 468 WP_122749609.1 FAD/FMN-containing dehydrogenase -
  PSH67_RS04645 (PSH67_04645) - 1030716..1031405 (+) 690 WP_069021700.1 energy-coupling factor ABC transporter permease -
  PSH67_RS04650 (PSH67_04650) - 1031481..1031696 (+) 216 WP_003171680.1 hypothetical protein -
  PSH67_RS04655 (PSH67_04655) yacG 1031693..1031893 (-) 201 WP_034102092.1 DNA gyrase inhibitor YacG -
  PSH67_RS04660 (PSH67_04660) coaE 1031890..1032513 (-) 624 WP_069021704.1 dephospho-CoA kinase -
  PSH67_RS04665 (PSH67_04665) pilD 1032510..1033376 (-) 867 WP_098465764.1 A24 family peptidase Machinery gene
  PSH67_RS04670 (PSH67_04670) pilC 1033373..1034581 (-) 1209 WP_305389665.1 type II secretion system F family protein Machinery gene
  PSH67_RS04675 (PSH67_04675) - 1034784..1035197 (+) 414 WP_305390850.1 pilin -
  PSH67_RS04680 (PSH67_04680) - 1035233..1036633 (+) 1401 WP_305389667.1 O-antigen ligase -
  PSH67_RS04690 (PSH67_04690) - 1036914..1037219 (+) 306 WP_034102101.1 DUF6388 family protein -
  PSH67_RS04695 (PSH67_04695) nadC 1037294..1038142 (-) 849 WP_034102102.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43325.77 Da        Isoelectric Point: 10.1711

>NTDB_id=785412 PSH67_RS04670 WP_305389665.1 1033373..1034581(-) (pilC) [Pseudomonas lurida strain FP2043]
MDDASTLYAWEGINRKGRRVSGQTTGHSVARVKVQLRQQGISPGHVRKKSPVLPSFVPSIKPADITLFTRQLATLLKAGI
PLLQAFDVIGEGFDNRPMRKLVQGLKQAIAAGTSLAEALRKQPHYFDALYCNLVAAGEQAGALETLLERVAIHREKSEQL
KARIKKAMTYPITVLVVASLVTGVLLVHVVPQFQTLFAGVDGKLPAFTLQVIALSEFMQKAWWIIALGILAAGLGLRHAY
RTFADVRAWLDSCLLKTPLAGKLLSKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSGPFRQAIEHMRRDVATGMQLN
QSMVASGLFPRMAIQMTAIGEESGTLDSMLEKVASHYEADVDNVVDNLTNLMEPLIMVVLGGIVGALVVAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=785412 PSH67_RS04670 WP_305389665.1 1033373..1034581(-) (pilC) [Pseudomonas lurida strain FP2043]
ATGGACGACGCTTCAACGCTCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGGCAGACCACCGGGCA
CAGCGTTGCAAGGGTCAAGGTTCAGTTACGCCAACAGGGCATCAGCCCTGGGCATGTGCGCAAGAAATCCCCAGTGCTGC
CGAGCTTCGTACCCTCGATCAAGCCGGCGGACATCACCCTGTTCACGCGCCAACTGGCTACGCTGCTCAAGGCCGGGATT
CCTCTCCTGCAAGCCTTCGACGTCATCGGTGAAGGTTTCGACAACCGGCCCATGCGTAAGCTGGTGCAAGGGTTGAAACA
GGCGATTGCCGCCGGCACCAGCCTTGCCGAGGCGCTGCGCAAGCAACCTCATTATTTCGACGCGCTGTACTGCAACCTGG
TAGCCGCCGGCGAACAGGCCGGAGCCCTTGAAACCTTGCTGGAACGCGTGGCAATCCACCGAGAGAAGAGCGAACAGCTA
AAGGCCAGAATCAAAAAAGCCATGACCTATCCGATCACCGTGCTGGTGGTCGCCAGTCTCGTCACCGGCGTGCTGCTGGT
CCACGTCGTGCCACAGTTCCAGACGCTGTTCGCCGGCGTCGACGGCAAGCTGCCTGCCTTCACATTGCAGGTGATCGCCC
TTTCCGAGTTCATGCAGAAAGCCTGGTGGATCATCGCGCTGGGCATTCTTGCGGCAGGCTTGGGGTTGCGCCACGCCTAC
CGTACCTTCGCCGATGTTCGTGCCTGGCTGGACAGCTGTTTGTTGAAAACGCCCCTGGCAGGCAAACTGCTGAGCAAATC
CGCCGTGGCCCGCTACGCCCGCACGCTTTCCACCACGTTTGCCGCCGGCGTTCCGTTGGTGCAGGCGCTGGACTCGGTGG
CCGGGGCCGCCGGTTCAGGGCCGTTCAGACAGGCAATCGAACATATGCGACGCGACGTAGCGACGGGCATGCAATTGAAT
CAATCCATGGTCGCCAGCGGCCTGTTTCCCCGCATGGCGATCCAGATGACAGCCATCGGCGAAGAATCAGGCACGCTGGA
CAGCATGCTGGAAAAGGTCGCCAGCCATTACGAGGCCGACGTGGATAACGTGGTCGATAACCTCACCAACCTTATGGAGC
CGCTGATTATGGTGGTACTGGGAGGGATCGTCGGCGCACTGGTGGTCGCGATGTATTTACCGGTATTCCAGTTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.848

98.507

0.59
  pilC Acinetobacter baumannii D1279779

51.899

98.259

0.51
  pilC Acinetobacter baylyi ADP1

51.515

98.507

0.507
  pilC Legionella pneumophila strain ERS1305867

49.114

98.259

0.483
  pilC Vibrio cholerae strain A1552

41.919

98.507

0.413
  pilC Vibrio campbellii strain DS40M4

40.302

98.756

0.398
  pilG Neisseria gonorrhoeae MS11

41.253

95.274

0.393
  pilG Neisseria meningitidis 44/76-A

39.844

95.522

0.381