Detailed information NTG0782436

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: PQ615_RS03340
• Genome accession: NZ_CP117058
• Coordinates: 701320..701922 (+)
• Length: 200 a.a.
• NCBI ID: WP_071794733.1
• Uniprot ID: A0A3L8GDT3
• Organism: Streptococcus iniae strain LSSM211007SI
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 696320..706922

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQ615_RS03325 (PQ615_03320)	-	697145..698590 (-)	1446	WP_003101555.1	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	-
PQ615_RS03330 (PQ615_03325)	-	698678..700330 (+)	1653	WP_003101552.1	polysaccharide biosynthesis protein	-
PQ615_RS03335 (PQ615_03330)	upp	700475..701104 (+)	630	WP_003101549.1	uracil phosphoribosyltransferase	-
PQ615_RS03340 (PQ615_03335)	clpP	701320..701922 (+)	603	WP_071794733.1	ATP-dependent Clp protease proteolytic subunit	Regulator
PQ615_RS03345 (PQ615_03340)	-	702044..702289 (+)	246	WP_003101546.1	hypothetical protein	-
PQ615_RS03350 (PQ615_03345)	-	702418..702888 (+)	471	WP_016356100.1	YlbF family regulator	-
PQ615_RS03355 (PQ615_03350)	-	702864..703142 (+)	279	WP_003101541.1	YlbG family protein	-
PQ615_RS03360 (PQ615_03355)	-	703281..704453 (+)	1173	WP_003101539.1	ABC transporter substrate-binding protein	-
PQ615_RS03365 (PQ615_03360)	-	704513..705382 (+)	870	WP_016356099.1	branched-chain amino acid ABC transporter permease	-
PQ615_RS03370 (PQ615_03365)	-	705386..706339 (+)	954	WP_016356098.1	branched-chain amino acid ABC transporter permease	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22166.52 Da
• Isoelectric Point: 6.3409

>NTDB_id=782436 PQ615_RS03340 WP_071794733.1 701320..701922(+) (clpP) [Streptococcus iniae strain LSSM211007SI]
MENTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDHTKDIYLYVNTPGGSVSAGLAIV
DTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILAK
NSGKTIKQVHKDAERDYWMSAEETLKYGFIDEIMENNKLK

Nucleotide

• Length: 603 bp

>NTDB_id=782436 PQ615_RS03340 WP_071794733.1 701320..701922(+) (clpP) [Streptococcus iniae strain LSSM211007SI]
ATGGAGAATACTATGATTCCTGTAGTTATTGAACAAACAAGTCGTGGGGAGCGTTCTTACGATATTTACTCTCGTTTACT
AAAAGATCGGATCATCATGTTAACTGGTCCGGTCGAAGACAATATGGCTAACTCTGTCATTGCACAGTTGCTTTTTTTGG
ATGCACAAGATCACACTAAAGATATTTATCTTTATGTTAATACCCCAGGTGGTTCCGTTTCTGCTGGTTTAGCCATTGTT
GATACAATGAACTTTATTAAATCTGATGTTCAAACAATTGTCATGGGAATGGCTGCTTCCATGGGAACAATCATTGCCTC
ATCAGGGACTAAAGGGAAACGGTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACAGGTGGTG
GTACGCAGCAATCAGATATGGCAATTGCTGCTGAACATCTCTTAAAAACACGTCACACTCTTGAAAAAATATTGGCAAAA
AATAGTGGAAAAACCATTAAACAAGTTCATAAAGATGCAGAACGTGATTATTGGATGAGTGCAGAAGAAACACTAAAATA
TGGCTTCATTGATGAAATTATGGAAAATAACAAACTTAAGTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (15-196)

3D structure

• AlphaFold DB: A0A3L8GDT3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus pyogenes JRS4	94.898	98	0.93
clpP	Streptococcus pyogenes MGAS315	94.898	98	0.93
clpP	Streptococcus mutans UA159	91.371	98.5	0.9
clpP	Streptococcus thermophilus LMD-9	90.816	98	0.89
clpP	Streptococcus thermophilus LMG 18311	90.816	98	0.89
clpP	Streptococcus pneumoniae R6	90.769	97.5	0.885
clpP	Streptococcus pneumoniae Rx1	90.769	97.5	0.885
clpP	Streptococcus pneumoniae D39	90.769	97.5	0.885
clpP	Streptococcus pneumoniae TIGR4	90.769	97.5	0.885
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	85.714	98	0.84
clpP	Lactococcus lactis subsp. cremoris KW2	85.204	98	0.835
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.477	96.5	0.545
clpP	Bacillus subtilis subsp. subtilis str. 168	56.842	95	0.54