Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   M0P28_RS08595 Genome accession   NZ_CP116958
Coordinates   1691446..1692156 (-) Length   236 a.a.
NCBI ID   WP_003065770.1    Uniprot ID   A0AAW6YI35
Organism   Streptococcus pasteurianus strain WUSP074     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686446..1697156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS08575 (M0P28_08575) rnc 1687115..1687801 (-) 687 WP_003065764.1 ribonuclease III -
  M0P28_RS08580 (M0P28_08580) - 1688102..1689157 (-) 1056 Protein_1637 IS1182 family transposase -
  M0P28_RS08585 (M0P28_08585) vicX 1689291..1690100 (-) 810 WP_117479415.1 MBL fold metallo-hydrolase Regulator
  M0P28_RS08590 (M0P28_08590) vicK 1690101..1691453 (-) 1353 WP_013852111.1 cell wall metabolism sensor histidine kinase VicK Regulator
  M0P28_RS08595 (M0P28_08595) vicR 1691446..1692156 (-) 711 WP_003065770.1 response regulator YycF Regulator
  M0P28_RS08600 (M0P28_08600) - 1692461..1693225 (+) 765 WP_117479417.1 amino acid ABC transporter ATP-binding protein -
  M0P28_RS08605 (M0P28_08605) - 1693236..1694048 (+) 813 WP_117479418.1 transporter substrate-binding domain-containing protein -
  M0P28_RS08610 (M0P28_08610) - 1694065..1694769 (+) 705 WP_003065775.1 amino acid ABC transporter permease -
  M0P28_RS08615 (M0P28_08615) - 1694781..1695428 (+) 648 WP_003065777.1 amino acid ABC transporter permease -
  M0P28_RS08620 (M0P28_08620) - 1695520..1696128 (-) 609 WP_117479420.1 TVP38/TMEM64 family protein -
  M0P28_RS08625 (M0P28_08625) - 1696376..1696678 (-) 303 WP_003065782.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27119.93 Da        Isoelectric Point: 4.7040

>NTDB_id=781703 M0P28_RS08595 WP_003065770.1 1691446..1692156(-) (vicR) [Streptococcus pasteurianus strain WUSP074]
MKKILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIE
LTHREFELLHHLATHMGQVMTREYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=781703 M0P28_RS08595 WP_003065770.1 1691446..1692156(-) (vicR) [Streptococcus pasteurianus strain WUSP074]
ATGAAAAAAATTCTTATCGTGGATGATGAAAAACCAATTTCGGATATTATTAAATTTAATTTAGCTAAAGAAGGTTATGA
AACTGTAACGGCTTTTGATGGTCGTGAAGCTATTACAAAGTTTGAGGAAGAAAATCCAGATTTAATTATCCTGGATTTGA
TGTTGCCAGAGTTGGATGGGCTTGAAGTGGCTAAGGAAGTTCGCAAGACAAGTCATATTCCAATCATCATGTTGTCTGCT
AAGGATAGCGAGTTTGATAAAGTTATCGGTCTTGAAATTGGTGCAGATGACTATGTAACCAAACCATTTTCAAATCGTGA
ATTGTTGGCGCGTGTTAAAGCGCACCTTCGTCGTACAGAAAATATTGAAACAGCAGTTGCTGAAGAAAATGCTTCGGCTT
CAAATTCAGAAATCACAATTGGCGACTTAAAAATTTTACCAGATGCCTTTGTAGCACAAAAACGTGGTGAAGATATCGAA
TTAACACACCGTGAGTTTGAATTGCTTCATCATTTGGCAACTCATATGGGACAAGTCATGACTCGTGAATATCTTTTGGA
AACCGTTTGGGGCTATGATTATTTTGGTGATGTGCGTACGGTTGACGTAACGATTCGTCGTTTACGCGAAAAAATTGAAG
ATACACCAAGCCGTCCAGAATATATTTTGACACGTCGGGGTGTTGGGTACTACATGAAGTCATATGAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.678

100

0.907
  micA Streptococcus pneumoniae Cp1015

77.35

99.153

0.767
  covR Streptococcus salivarius strain HSISS4

47.414

98.305

0.466
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.69

98.305

0.449
  scnR Streptococcus mutans UA159

37.288

100

0.373