Detailed information NTG0781702

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: Q2B68_RS01535
• Genome accession: NZ_CP130280
• Coordinates: 308463..309584 (+)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain PM415
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 303463..314584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q2B68_RS01515 (Q2B68_01515)	-	303770..304765 (-)	996	WP_014304282.1	DUF5105 domain-containing protein	-
Q2B68_RS01520 (Q2B68_01520)	-	304894..306294 (+)	1401	WP_115996104.1	YcdB/YcdC domain-containing protein	-
Q2B68_RS01525 (Q2B68_01525)	-	306495..307853 (+)	1359	WP_302565056.1	YcdB/YcdC domain-containing protein	-
Q2B68_RS01530 (Q2B68_01530)	-	307850..308353 (-)	504	WP_044053426.1	M15 family metallopeptidase	-
Q2B68_RS01535 (Q2B68_01535)	rapF	308463..309584 (+)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
Q2B68_RS01540 (Q2B68_01540)	-	309700..310479 (+)	780	WP_015388737.1	glucose 1-dehydrogenase	-
Q2B68_RS01545 (Q2B68_01545)	-	310562..312241 (+)	1680	WP_069448528.1	alpha-glucosidase	-
Q2B68_RS01550 (Q2B68_01550)	-	312432..313391 (+)	960	WP_024084862.1	metal ABC transporter substrate-binding protein	-
Q2B68_RS01555 (Q2B68_01555)	-	313446..314141 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=781702 Q2B68_RS01535 WP_003156660.1 308463..309584(+) (rapF) [Bacillus amyloliquefaciens strain PM415]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=781702 Q2B68_RS01535 WP_003156660.1 308463..309584(+) (rapF) [Bacillus amyloliquefaciens strain PM415]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAACTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACAAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402