Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   M0P28_RS08585 Genome accession   NZ_CP116958
Coordinates   1689291..1690100 (-) Length   269 a.a.
NCBI ID   WP_117479415.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP074     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1688057..1689157 1689291..1690100 flank 134


Gene organization within MGE regions


Location: 1688057..1690100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS08580 (M0P28_08580) - 1688102..1689157 (-) 1056 Protein_1637 IS1182 family transposase -
  M0P28_RS08585 (M0P28_08585) vicX 1689291..1690100 (-) 810 WP_117479415.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30290.32 Da        Isoelectric Point: 5.5960

>NTDB_id=781701 M0P28_RS08585 WP_117479415.1 1689291..1690100(-) (vicX) [Streptococcus pasteurianus strain WUSP074]
MSENAFKYSILASGSTGNSFYVETPQKRFLIDAGLTGKKITSLLAEIDRKPEDLDAIFITHEHSDHIKGVGVLARRYNLD
VYANEKTWQMIDERNMIGKLDFAQKHIFERGKTLTLGDIDIESFGVSHDAVEPQFYRLMKDNKSFVILTDTGYVSDRMAG
IIENADGYLIESNHDVEILCSGAYPWSLKQRILSDKGHLSNEDGAGTMIRTIGNRTKKIYLGHLSKENNIKELAHMTMEN
NLIQADFGVGYDMKVFDTSPEEATPLTKL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=781701 M0P28_RS08585 WP_117479415.1 1689291..1690100(-) (vicX) [Streptococcus pasteurianus strain WUSP074]
ATGTCTGAAAATGCTTTTAAATATAGTATTTTAGCCTCCGGTTCAACTGGAAATTCTTTTTATGTGGAAACACCACAAAA
ACGTTTTTTGATTGATGCGGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCAGAGGACT
TAGATGCTATTTTTATTACACACGAACATTCTGACCATATCAAAGGGGTTGGGGTGTTAGCACGTCGTTATAATCTTGAT
GTTTATGCGAATGAAAAAACGTGGCAAATGATTGATGAGCGAAATATGATTGGAAAGCTTGATTTCGCTCAAAAACATAT
TTTTGAACGTGGTAAAACATTGACACTTGGTGACATTGATATTGAAAGTTTTGGTGTTAGCCACGATGCCGTTGAGCCAC
AATTTTATCGTTTGATGAAAGATAATAAATCGTTTGTTATCTTAACAGATACAGGTTATGTTAGTGACCGCATGGCAGGA
ATTATTGAAAATGCTGACGGTTACTTAATTGAATCAAATCATGATGTTGAGATTTTATGTTCTGGTGCTTATCCGTGGAG
TTTGAAACAACGTATCCTATCTGATAAAGGGCACTTGTCAAACGAAGACGGTGCTGGGACAATGATTCGAACCATTGGAA
ATCGCACGAAGAAAATTTACCTTGGACATTTGAGTAAAGAAAACAATATCAAAGAATTGGCTCACATGACCATGGAAAAT
AATCTTATTCAAGCTGACTTTGGGGTTGGTTATGACATGAAAGTCTTTGACACCTCACCAGAGGAAGCAACACCATTAAC
AAAGTTATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766