NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	M0P24_RS01780	Genome accession	NZ_CP116957
Coordinates	336692..337282 (+)	Length	196 a.a.
NCBI ID	WP_003066032.1	Uniprot ID	A0AAW6YFC2
Organism	Streptococcus pasteurianus strain WUSP070
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 331692..342282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0P24_RS01765 (M0P24_01765)	-	333285..334379 (+)	1095	WP_003066037.1	cystathionine gamma-synthase	-
M0P24_RS01770 (M0P24_01770)	-	334381..335544 (+)	1164	WP_003066036.1	MalY/PatB family protein	-
M0P24_RS01775 (M0P24_01775)	upp	335702..336331 (+)	630	WP_003066034.1	uracil phosphoribosyltransferase	-
M0P24_RS01780 (M0P24_01780)	clpP	336692..337282 (+)	591	WP_003066032.1	ATP-dependent Clp protease proteolytic subunit ClpP	Regulator
M0P24_RS01785 (M0P24_01785)	-	337374..337817 (+)	444	WP_003066031.1	YlbF family regulator	-
M0P24_RS01790 (M0P24_01790)	-	337810..338061 (+)	252	WP_003066029.1	YlbG family protein	-
M0P24_RS01795 (M0P24_01795)	-	338171..339352 (+)	1182	WP_003066027.1	ABC transporter substrate-binding protein	-
M0P24_RS01800 (M0P24_01800)	-	339404..340288 (+)	885	WP_003066025.1	branched-chain amino acid ABC transporter permease	-
M0P24_RS01805 (M0P24_01805)	-	340292..341245 (+)	954	WP_003066023.1	branched-chain amino acid ABC transporter permease	-
M0P24_RS01810 (M0P24_01810)	-	341245..342009 (+)	765	WP_003066020.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21494.45 Da Isoelectric Point: 4.3383

                                >NTDB_id=781609 M0P24_RS01780 WP_003066032.1 336692..337282(+) (clpP) [Streptococcus pasteurianus strain WUSP070]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRQNLEQILADNSGQ

TLEKVHADAERDNWMSAQETLEYGFIDEIMVNNELN

Nucleotide

Download Length: 591 bp

                                >NTDB_id=781609 M0P24_RS01780 WP_003066032.1 336692..337282(+) (clpP) [Streptococcus pasteurianus strain WUSP070]

ATGATTCCTGTAGTTATTGAACAAACGAGCCGTGGCGAACGCTCATACGATATTTATTCACGCCTTTTGAAAGACCGTAT

TATCATGTTGACTGGACCAGTTGAAGATAATATGGCTAACTCTATCATTGCCCAATTGTTGTTCCTTGATGCACAAGATA

ACACTAAAGATATTTACCTTTATGTTAATACTCCTGGTGGTTCAGTATCAGCAGGGCTTGCCATTGTTGATACAATGAAT

TTCATTAAGTCAGATGTTCAAACAATTGTTATGGGTATGGCAGCTTCAATGGGAACTGTTATTGCGTCATCAGGTGCAAA

AGGTAAACGTTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACTGGTGGCGGTACACAACAAA

CAGATATGGCAATTGCTGCCGAACACCTTTTGAAAACACGTCAAAACTTGGAACAAATTTTGGCTGACAACTCTGGTCAA

ACATTGGAAAAAGTTCATGCTGATGCTGAACGTGATAACTGGATGAGTGCACAAGAAACTCTCGAATACGGCTTCATCGA

CGAAATCATGGTAAACAACGAATTAAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus thermophilus LMG 18311	95.385	99.49	0.949
clpP	Streptococcus thermophilus LMD-9	95.385	99.49	0.949
clpP	Streptococcus pneumoniae Rx1	94.388	100	0.944
clpP	Streptococcus pneumoniae D39	94.388	100	0.944
clpP	Streptococcus pneumoniae R6	94.388	100	0.944
clpP	Streptococcus pneumoniae TIGR4	94.388	100	0.944
clpP	Streptococcus pyogenes JRS4	90.306	100	0.903
clpP	Streptococcus pyogenes MGAS315	90.306	100	0.903
clpP	Streptococcus mutans UA159	88.265	100	0.883
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	86.735	100	0.867
clpP	Lactococcus lactis subsp. cremoris KW2	86.224	100	0.862
clpP	Bacillus subtilis subsp. subtilis str. 168	58.763	98.98	0.582
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.474	96.939	0.577

Detailed information NTG0781609