Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   PHA78_RS07190 Genome accession   NZ_CP116604
Coordinates   1503856..1504446 (-) Length   196 a.a.
NCBI ID   WP_002937303.1    Uniprot ID   A0A0K2E545
Organism   Streptococcus sp. HN38     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498856..1509446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS07165 - 1499354..1500118 (-) 765 WP_024376797.1 ABC transporter ATP-binding protein -
  PHA78_RS07170 - 1500118..1501065 (-) 948 WP_099779814.1 branched-chain amino acid ABC transporter permease -
  PHA78_RS07175 - 1501068..1501955 (-) 888 WP_024376795.1 branched-chain amino acid ABC transporter permease -
  PHA78_RS07180 - 1502156..1503325 (-) 1170 WP_004298924.1 ABC transporter substrate-binding protein -
  PHA78_RS07185 - 1503457..1503729 (-) 273 WP_002937299.1 YlbG family protein -
  PHA78_RS07190 clpP 1503856..1504446 (-) 591 WP_002937303.1 ATP-dependent Clp protease proteolytic subunit Regulator
  PHA78_RS07195 upp 1504568..1505197 (-) 630 WP_099779813.1 uracil phosphoribosyltransferase -
  PHA78_RS07200 - 1505275..1506891 (-) 1617 WP_105101034.1 alpha-glucosidase -
  PHA78_RS07205 gtfA 1506964..1508412 (-) 1449 WP_272157901.1 sucrose phosphorylase -
  PHA78_RS07210 - 1508482..1509312 (-) 831 WP_002937312.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21494.74 Da        Isoelectric Point: 5.7110

>NTDB_id=778771 PHA78_RS07190 WP_002937303.1 1503856..1504446(-) (clpP) [Streptococcus sp. HN38]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK
TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=778771 PHA78_RS07190 WP_002937303.1 1503856..1504446(-) (clpP) [Streptococcus sp. HN38]
ATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTCACGCCTTTTGAAAGACCGCAT
TATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCCCAATTGCTTTTCCTTGATGCCCAAGACC
CTACAAAGGATATTTACCTCTATGTTAATACGCCAGGAGGATCGGTGTCAGCAGGTCTTGCCATTGTAGACACGATGAAT
TTCATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCATCATTGCATCAAGCGGTGCCAA
GGGCAAACGTTTCATGTTGCCAAATGCGGAATACATGATTCACCAGCCAATGGGTGGAACTGGTGGCGGTACTCAGCAAA
CGGATATGGCCATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATCTTGGCAGACAACTCAGGTAAG
ACAGTGAAACAAATCCATAAGGATGCGGAACGCGATTACTGGATGTCAGCTGAAGAAACCTTGGCTTACGGATTTATTGA
CCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.347

100

0.923
  clpP Streptococcus pyogenes MGAS315

92.347

100

0.923
  clpP Streptococcus mutans UA159

90.306

100

0.903
  clpP Streptococcus pneumoniae R6

88.776

100

0.888
  clpP Streptococcus pneumoniae Rx1

88.776

100

0.888
  clpP Streptococcus pneumoniae D39

88.776

100

0.888
  clpP Streptococcus pneumoniae TIGR4

88.776

100

0.888
  clpP Streptococcus thermophilus LMG 18311

88.776

100

0.888
  clpP Streptococcus thermophilus LMD-9

88.776

100

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.184

100

0.842
  clpP Lactococcus lactis subsp. cremoris KW2

83.673

100

0.837
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

98.469

0.577