Detailed information NTG0778420

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: QYR08_RS15285
• Genome accession: NZ_CP129343
• Coordinates: 3242716..3243396 (-)
• Length: 226 a.a.
• NCBI ID: WP_010874090.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3237716..3248396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR08_RS15270 (QYR08_15225)	-	3238384..3240009 (-)	1626	WP_010874087.1	ammonium transporter	-
QYR08_RS15275 (QYR08_15230)	-	3240006..3241076 (-)	1071	WP_010874088.1	potassium channel family protein	-
QYR08_RS15280 (QYR08_15235)	clpX	3241374..3242711 (-)	1338	WP_010874089.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
QYR08_RS15285 (QYR08_15240)	clpP	3242716..3243396 (-)	681	WP_010874090.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QYR08_RS15290 (QYR08_15245)	tig	3243696..3245111 (-)	1416	WP_010874091.1	trigger factor	-
QYR08_RS15295 (QYR08_15250)	-	3245605..3246621 (+)	1017	WP_010874092.1	aspartate-semialdehyde dehydrogenase	-
QYR08_RS15300 (QYR08_15255)	dapA	3246681..3247586 (+)	906	WP_010874093.1	4-hydroxy-tetrahydrodipicolinate synthase	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 24823.42 Da
• Isoelectric Point: 4.4360

>NTDB_id=778420 QYR08_RS15285 WP_010874090.1 3242716..3243396(-) (clpP) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
MVNSRSPYRSPLSTLGGNNIQSVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDI
QLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQA
REILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVISRPNLPDPTTPVTSLG

Nucleotide

• Length: 681 bp

>NTDB_id=778420 QYR08_RS15285 WP_010874090.1 3242716..3243396(-) (clpP) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]
ATGGTCAACTCCCGTTCTCCCTACCGTTCTCCCCTCAGTACCCTAGGGGGCAATAACATCCAAAGCGTTGTTCCCATGGT
GGTGGAACAGTCTGGCATGGGCGAGCGAGCCTTCGACATTTACTCCCGTCTGCTAAGGGAAAGAATCATCTTTTTGGGCA
CCCCTGTGGACGACCAAGTGGCAGATTCCATTGTGGCCCAGCTACTATTTTTGGACGCAGAGGACCCGGAAAAAGACATC
CAACTCTACATCAACTCCCCGGGGGGCTCCGTTTATGCCGGCCTGGCCATCTATGACACCATGCAACAGATTCGTCCCGA
TGTGGTCACCATCTGTTTTGGTCTGGCTGCCAGCATGGGGGCTTTTTTGCTTTCCGGTGGCTGTAAGGGAAAACGTATGG
CTTTGCCTAGTTCTCGCATCATGATTCACCAACCCCTCGGGGGAGCCCAGGGTCAAGCGGTGGAAATTGAAATTCAGGCC
AGGGAAATCCTGTACATCAAGGATCGCCTCAATACCATGTTGGTGGAACACACCGGCCAACCCATGGAAAAACTCCAGGA
AGATACGGAAAGAGATTTCTTTATGTCTGCGGAGGAAGCAAAGGAGTATGGCCTCATTGACCAGGTAATTTCCCGCCCTA
ATCTTCCCGACCCCACTACCCCCGTCACCTCCCTCGGTTAG

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (34-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.016	84.513	0.566
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	66.138	83.628	0.553
clpP	Lactococcus lactis subsp. cremoris KW2	53.061	86.726	0.46
clpP	Streptococcus pneumoniae R6	52.308	86.283	0.451
clpP	Streptococcus pneumoniae TIGR4	52.308	86.283	0.451
clpP	Streptococcus pneumoniae Rx1	52.308	86.283	0.451
clpP	Streptococcus pneumoniae D39	52.308	86.283	0.451
clpP	Streptococcus thermophilus LMG 18311	51.795	86.283	0.447
clpP	Streptococcus thermophilus LMD-9	51.795	86.283	0.447
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.282	86.283	0.442
clpP	Streptococcus mutans UA159	50.254	87.168	0.438
clpP	Streptococcus pyogenes JRS4	50.256	86.283	0.434
clpP	Streptococcus pyogenes MGAS315	50.256	86.283	0.434