Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   BV187_RS01770 Genome accession   NZ_CP116490
Coordinates   376416..377813 (-) Length   465 a.a.
NCBI ID   WP_011961745.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 93P10H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371416..382813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV187_RS01735 (BV187_0358) - 371657..371863 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV187_RS01740 (BV187_0359) - 371949..372155 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV187_RS01745 (BV187_0360) cueR 372232..372618 (+) 387 WP_005654127.1 Cu(I)-responsive transcriptional regulator -
  BV187_RS01750 (BV187_0361) metJ 372632..372949 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  BV187_RS01755 (BV187_0362) rho 373197..374459 (+) 1263 WP_005648966.1 transcription termination factor Rho -
  BV187_RS01760 (BV187_0363) pilD 374513..375205 (-) 693 WP_005686720.1 prepilin peptidase Machinery gene
  BV187_RS01765 (BV187_0364) pilC 375202..376419 (-) 1218 WP_005686722.1 type II secretion system F family protein Machinery gene
  BV187_RS01770 (BV187_0365) pilB 376416..377813 (-) 1398 WP_011961745.1 GspE/PulE family protein Machinery gene
  BV187_RS01775 (BV187_0366) pilA 377810..378259 (-) 450 WP_005686726.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BV187_RS01780 (BV187_0367) ampD 378374..378934 (+) 561 WP_005648974.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BV187_RS01785 (BV187_0368) corC 379557..380456 (+) 900 WP_011961742.1 CNNM family magnesium/cobalt transport protein CorC -
  BV187_RS01790 (BV187_0369) lnt 380479..382008 (+) 1530 WP_074032781.1 apolipoprotein N-acyltransferase -
  BV187_RS01795 (BV187_0370) rsmE 382058..382795 (+) 738 WP_005686736.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53091.42 Da        Isoelectric Point: 5.6399

>NTDB_id=777566 BV187_RS01770 WP_011961745.1 376416..377813(-) (pilB) [Haemophilus influenzae strain 93P10H1]
MTSYALLHTQRVTAQNGEIFTISSDLWARNQQQQSLLLRYFALPLKEENNRLWLGVDSLSNLSACETISFITGKPVEPIL
LESSQLKELLQQLTPHQMQEEEQVKYYQHQEQSHLEQQDDEPVIRLLNQIFESALQKNASDIHLETLADQFQVRFRIDGV
LQPQPLISKIFANRIISRLKLLAKLDISENRLPQDGRFQFKTTFSDILDFRLSTLPTHWGEKIVLRAQQNKPVELSFAEL
GMTENQQQAFQRALSQPQGLILVTGPTGSGKSISLYTALQWLNTPDKHIMTAEDPIEIELDGIIQSQINPQIGLDFSRLL
RTFLRQDPDIIMLGEIRDEESARIALRAAQTGHLVLSTLHTNDAISAISRLQQLGIQQYEIENSLLLVIAQRLVRKLCSK
CGGNLINSCDCHQGYRGRIGVYQFLHWQQNGYQTDFENLRESGLEKVSQGITDEKEIERVLGKNL

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=777566 BV187_RS01770 WP_011961745.1 376416..377813(-) (pilB) [Haemophilus influenzae strain 93P10H1]
ATGACGAGTTATGCTTTACTTCATACTCAGCGTGTAACCGCTCAAAATGGCGAGATCTTTACGATCTCGTCTGATTTATG
GGCGCGTAATCAACAACAGCAATCCTTGCTCTTGCGGTATTTTGCTTTGCCACTTAAAGAAGAAAATAATCGTCTTTGGC
TAGGGGTTGATTCTCTCTCCAATCTTTCAGCTTGTGAAACCATTTCGTTTATAACAGGAAAACCTGTCGAACCAATTTTG
TTAGAAAGCAGCCAACTCAAAGAACTGTTACAACAACTTACTCCGCACCAAATGCAAGAGGAAGAGCAAGTTAAATATTA
CCAACATCAAGAACAGTCTCATCTTGAACAACAAGATGATGAACCTGTTATCCGCTTACTTAATCAGATTTTTGAATCTG
CCTTACAAAAAAATGCCTCTGATATTCATTTAGAAACCTTGGCTGATCAGTTTCAAGTGCGGTTTAGAATTGATGGTGTT
TTACAACCACAACCCTTAATAAGCAAAATATTCGCCAATCGTATTATTTCACGCTTAAAATTACTGGCTAAATTAGATAT
TAGTGAAAATCGACTTCCACAAGATGGACGATTTCAATTTAAAACCACTTTTTCCGATATTCTTGATTTTCGCCTTTCAA
CCTTACCAACCCATTGGGGCGAAAAAATCGTGTTGCGAGCGCAACAAAATAAACCTGTAGAACTTAGCTTTGCTGAACTG
GGTATGACCGAAAATCAGCAACAAGCATTTCAACGCGCACTTAGCCAGCCACAAGGATTAATTTTAGTAACTGGCCCCAC
AGGAAGTGGGAAAAGTATCTCACTTTACACCGCACTTCAGTGGCTAAATACACCTGATAAACATATTATGACTGCTGAGG
ATCCCATTGAAATTGAGCTTGATGGCATTATTCAAAGCCAAATTAATCCACAGATTGGATTAGATTTTAGCCGTCTATTG
CGCACTTTTTTACGTCAAGATCCCGATATCATTATGCTAGGTGAAATTCGCGATGAAGAAAGTGCAAGGATTGCATTACG
TGCCGCCCAAACGGGGCATTTGGTGCTTTCAACTTTACATACCAATGATGCAATTTCTGCCATTTCTCGTTTACAACAAC
TCGGTATTCAGCAGTATGAAATTGAAAACAGTTTACTACTTGTCATTGCACAACGTCTTGTACGAAAGCTTTGTTCAAAG
TGCGGTGGAAATTTAATAAATTCTTGTGATTGCCATCAAGGTTATCGAGGGCGAATCGGCGTGTATCAATTTCTACATTG
GCAACAGAATGGCTATCAAACGGATTTTGAGAATTTACGAGAGAGTGGTTTAGAAAAAGTTAGCCAAGGCATAACAGATG
AGAAAGAAATTGAACGTGTGTTAGGTAAAAACTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(32-98)

Type II/IV secretion system protein (T2SSE)

(129-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Haemophilus influenzae 86-028NP

96.983

99.785

0.968
  pilB Haemophilus influenzae Rd KW20

95.484

100

0.955
  pilB Glaesserella parasuis strain SC1401

58.515

98.495

0.576
  pilB Vibrio cholerae strain A1552

40.607

100

0.46
  pilB Vibrio campbellii strain DS40M4

40.9

100

0.43
  pilB Vibrio parahaemolyticus RIMD 2210633

40.58

100

0.422
  pilB Legionella pneumophila strain ERS1305867

39.468

100

0.415
  pilB Acinetobacter baylyi ADP1

38.384

100

0.409
  pilB Acinetobacter baumannii D1279779

38.763

100

0.404
  pilF Neisseria gonorrhoeae MS11

37.605

100

0.385
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.74

100

0.381
  pilF Thermus thermophilus HB27

35.789

100

0.366