NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	PIB33_RS18890	Genome accession	NZ_CP116391
Coordinates	3562233..3562826 (+)	Length	197 a.a.
NCBI ID	WP_003228214.1	Uniprot ID	A0A199WEF2
Organism	Bacillus subtilis strain GXD-20
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3557233..3567826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIB33_RS18860 (PIB33_18860)	psmA	3557489..3557824 (+)	336	WP_003242480.1	SMR family transporter	-
PIB33_RS18865 (PIB33_18865)	psmB	3557824..3558144 (+)	321	WP_003228222.1	QacE family quaternary ammonium compound efflux SMR transporter	-
PIB33_RS18870 (PIB33_18870)	yvdQ	3558180..3558692 (-)	513	WP_014478056.1	DUF3231 family protein	-
PIB33_RS18875 (PIB33_18875)	cotNP	3558944..3560287 (-)	1344	WP_003228217.1	FAD-binding oxidoreductase	-
PIB33_RS18880 (PIB33_18880)	cotR	3560643..3561605 (+)	963	WP_029725962.1	sporulation hydrolase CotR	-
PIB33_RS18890 (PIB33_18890)	clpP	3562233..3562826 (+)	594	WP_003228214.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
PIB33_RS18895 (PIB33_18895)	pgmB	3562870..3563544 (-)	675	WP_032722567.1	beta-phosphoglucomutase	-
PIB33_RS18900 (PIB33_18900)	malL	3563541..3565226 (-)	1686	WP_032722569.1	oligo-1,6-glucosidase	-
PIB33_RS18905 (PIB33_18905)	mdxK	3565219..3567492 (-)	2274	WP_032722571.1	maltose phosphorylase	-

Sequence

Protein

Download Length: 197 a.a. Molecular weight: 21682.00 Da Isoelectric Point: 4.9416

                                >NTDB_id=777047 PIB33_RS18890 WP_003228214.1 3562233..3562826(+) (clpP) [Bacillus subtilis strain GXD-20]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDKK

Nucleotide

Download Length: 594 bp

                                >NTDB_id=777047 PIB33_RS18890 WP_003228214.1 3562233..3562826(+) (clpP) [Bacillus subtilis strain GXD-20]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA

TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG

AAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC

ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCCTGCTTGCAGCCGG

CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCACTTGGCGGTGCGCAAGGTCAAGCGA

CAGAAATTGAAATTGCTGCGAAACGCATTCTCTTGCTTCGTGACAAATTAAACAAAGTCCTAGCTGAACGTACTGGCCAG

CCGCTTGAAGTGATCGAACGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA

CAAAATTTTGACTCACACAGAAGACAAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A199WEF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	100	100	1
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.617	95.431	0.655
clpP	Streptococcus thermophilus LMG 18311	58.163	99.492	0.579
clpP	Streptococcus thermophilus LMD-9	58.163	99.492	0.579
clpP	Streptococcus pneumoniae D39	57.812	97.462	0.563
clpP	Streptococcus pneumoniae Rx1	57.812	97.462	0.563
clpP	Streptococcus pneumoniae R6	57.812	97.462	0.563
clpP	Streptococcus pneumoniae TIGR4	57.812	97.462	0.563
clpP	Lactococcus lactis subsp. cremoris KW2	57.895	96.447	0.558
clpP	Streptococcus pyogenes JRS4	56.122	99.492	0.558
clpP	Streptococcus pyogenes MGAS315	56.122	99.492	0.558
clpP	Streptococcus mutans UA159	54.822	100	0.548
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.789	96.447	0.538

Detailed information NTG0777047