Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QVM97_RS05170 Genome accession   NZ_CP128931
Coordinates   1070839..1071444 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain TUM9757     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065839..1076444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM97_RS05135 (QVM97_05135) - 1066393..1066491 (+) 99 Protein_1003 hypothetical protein -
  QVM97_RS05140 (QVM97_05140) rsmS 1066544..1066705 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QVM97_RS05145 (QVM97_05145) priC 1066719..1067246 (-) 528 WP_000844876.1 primosomal replication protein N'' -
  QVM97_RS05150 (QVM97_05150) ybaN 1067316..1067693 (+) 378 WP_001188905.1 DUF454 family protein -
  QVM97_RS05155 (QVM97_05155) apt 1067846..1068397 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QVM97_RS05160 (QVM97_05160) dnaX 1068526..1070457 (+) 1932 WP_096849450.1 DNA polymerase III subunit gamma/tau -
  QVM97_RS05165 (QVM97_05165) ybaB 1070510..1070839 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QVM97_RS05170 (QVM97_05170) recR 1070839..1071444 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QVM97_RS05175 (QVM97_05175) htpG 1071554..1073428 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  QVM97_RS05180 (QVM97_05180) adk 1073608..1074252 (+) 645 WP_001220233.1 adenylate kinase -
  QVM97_RS05185 (QVM97_05185) hemH 1074488..1075450 (+) 963 WP_001250096.1 ferrochelatase -
  QVM97_RS05190 (QVM97_05190) aes 1075447..1076406 (-) 960 WP_000801859.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=776166 QVM97_RS05170 WP_001195025.1 1070839..1071444(+) (recR) [Escherichia coli strain TUM9757]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=776166 QVM97_RS05170 WP_001195025.1 1070839..1071444(+) (recR) [Escherichia coli strain TUM9757]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCCATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443