Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PG906_RS14420 Genome accession   NZ_CP115944
Coordinates   2988343..2989608 (+) Length   421 a.a.
NCBI ID   WP_197333426.1    Uniprot ID   G3A1P5
Organism   Ralstonia syzygii R24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2983343..2994608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG906_RS14405 - 2983640..2984746 (-) 1107 WP_197333429.1 site-specific integrase -
  PG906_RS14410 - 2985046..2986323 (+) 1278 WP_197333428.1 HlyC/CorC family transporter -
  PG906_RS14415 pilB 2986571..2988298 (+) 1728 WP_197333427.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PG906_RS14420 pilC 2988343..2989608 (+) 1266 WP_197333426.1 type II secretion system F family protein Machinery gene
  PG906_RS14425 - 2989611..2990492 (+) 882 WP_269437001.1 prepilin peptidase -
  PG906_RS14430 coaE 2990505..2991119 (+) 615 WP_197333425.1 dephospho-CoA kinase -
  PG906_RS14435 zapD 2991236..2991994 (+) 759 WP_197333424.1 cell division protein ZapD -
  PG906_RS14440 - 2992006..2992221 (+) 216 WP_197333423.1 DNA gyrase inhibitor YacG -
  PG906_RS14445 - 2992214..2992675 (-) 462 WP_197333422.1 NUDIX domain-containing protein -
  PG906_RS14450 - 2992653..2993537 (-) 885 WP_013211399.1 ATP-binding protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46404.61 Da        Isoelectric Point: 10.4051

>NTDB_id=774554 PG906_RS14420 WP_197333426.1 2988343..2989608(+) (pilC) [Ralstonia syzygii R24]
MATRAPTANRSAAASARKTAAKKAPTQYIFEWEGKDRKGKAFKGEMRAENLAEVNATLRKQGLSITKSKRRRAARGKKIT
PKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIESGSSMAQAFRRHPKYFDSLYCNLIDAGEQGG
ILDALLERLSLYMEKSIALKAQIKSAMIYPISVLTVAFMVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGISDFFVQW
WYVIVFTPIIGIILYARAFKRSEKVQRNTHKAILKMPIFGSIIRKATIARWTRTLATMFSAGTPLVESMESVAGAAGNWV
YHDATIEIQQAVRIGTSLTNAMQATHVFDNMVLQMTQIGEESGALDNMLLKVAEFYEREVDDAVANISALIEPLIIVILG
VLIGGMVVAMYLPIFKLGQVV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=774554 PG906_RS14420 WP_197333426.1 2988343..2989608(+) (pilC) [Ralstonia syzygii R24]
ATGGCCACACGAGCACCGACCGCGAACCGGTCTGCCGCCGCATCGGCACGCAAGACCGCCGCCAAGAAGGCGCCCACGCA
ATACATCTTCGAGTGGGAAGGCAAGGACCGCAAAGGCAAAGCCTTCAAGGGCGAGATGCGGGCGGAGAACCTCGCCGAAG
TCAACGCCACGCTGCGCAAGCAAGGTCTGTCGATCACCAAGTCCAAGCGTCGGCGCGCAGCACGCGGCAAGAAGATCACG
CCGAAAGACATCGCCTACTTCACGCGCCAGCTGTCGACCATGCTGAAGGCCGGGGTGCCGCTGCTGCAATCGGTCGACAT
CATCGCGCGCGGCCATGCCAACCCGAACTTCACCCAGCTGCTGACGGAAATCCGCGTCGACATCGAGTCGGGCAGCAGCA
TGGCGCAGGCTTTCCGCCGCCATCCGAAGTACTTCGATTCGCTGTACTGCAACCTGATCGACGCGGGTGAACAGGGCGGT
ATTCTCGACGCGCTGCTCGAGCGGCTGTCGCTGTACATGGAAAAGTCGATCGCGCTGAAGGCACAGATCAAGTCGGCCAT
GATCTATCCGATCTCGGTGCTGACGGTGGCTTTCATGGTCACGGTGGTGCTGATGATCTTCGTGGTGCCGGCGTTCAAGG
GCGTGTTCGCCAGCTTCGGCGCCACGCTGCCGGCACCGACGCTGGTGGTGATGGGCATCTCGGACTTCTTCGTGCAGTGG
TGGTACGTCATCGTCTTCACGCCCATCATCGGCATCATCCTGTACGCGCGGGCCTTCAAGCGCTCGGAGAAGGTGCAGCG
CAACACGCACAAGGCCATCCTGAAGATGCCGATCTTCGGCAGCATCATCCGCAAGGCCACCATCGCGCGCTGGACGCGTA
CGCTGGCAACGATGTTCTCGGCCGGAACGCCGCTGGTGGAGTCGATGGAATCCGTGGCGGGGGCGGCGGGCAACTGGGTC
TACCATGACGCCACCATCGAGATCCAGCAGGCGGTGCGCATCGGTACCAGCCTCACCAACGCCATGCAGGCCACCCACGT
GTTCGACAACATGGTGCTGCAGATGACGCAGATCGGCGAGGAATCCGGTGCGCTGGACAACATGCTGCTGAAGGTGGCCG
AATTCTACGAGCGCGAGGTCGATGACGCGGTCGCCAACATCTCCGCCCTGATCGAGCCGCTCATCATCGTGATCCTGGGC
GTGCTGATCGGTGGCATGGTGGTCGCCATGTACCTGCCGATCTTCAAGCTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3A1P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.495

95.962

0.485
  pilG Neisseria gonorrhoeae MS11

50.877

94.774

0.482
  pilG Neisseria meningitidis 44/76-A

50.627

94.774

0.48
  pilC Acinetobacter baumannii D1279779

47.912

96.675

0.463
  pilC Acinetobacter baylyi ADP1

47.174

96.675

0.456
  pilC Legionella pneumophila strain ERS1305867

46.192

96.675

0.447
  pilC Vibrio campbellii strain DS40M4

39.303

95.487

0.375
  pilC Vibrio cholerae strain A1552

39

95.012

0.371