Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AVT_RS16980 Genome accession   NZ_CP115303
Coordinates   3331067..3331648 (-) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus tropicus strain JMT105-2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3326067..3336648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS16955 (AVT_16955) - 3327042..3327500 (+) 459 WP_001190080.1 NUDIX hydrolase -
  AVT_RS16960 (AVT_16960) rapZ 3327521..3328402 (+) 882 WP_029440966.1 RNase adapter RapZ -
  AVT_RS16965 (AVT_16965) - 3328406..3329359 (+) 954 WP_000712175.1 gluconeogenesis factor YvcK family protein -
  AVT_RS16970 (AVT_16970) whiA 3329449..3330399 (+) 951 WP_000006563.1 DNA-binding protein WhiA -
  AVT_RS16975 (AVT_16975) - 3330423..3330671 (+) 249 WP_000250307.1 HPr family phosphocarrier protein -
  AVT_RS16980 (AVT_16980) clpP 3331067..3331648 (-) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AVT_RS16985 (AVT_16985) - 3331891..3332760 (-) 870 WP_029440964.1 DUF421 domain-containing protein -
  AVT_RS16990 (AVT_16990) - 3332781..3332987 (-) 207 WP_029440963.1 DUF1657 domain-containing protein -
  AVT_RS16995 (AVT_16995) spoVAE 3332997..3333347 (-) 351 WP_000575919.1 stage V sporulation protein AE -
  AVT_RS17000 (AVT_17000) spoVAD 3333344..3334360 (-) 1017 WP_029440962.1 stage V sporulation protein AD -
  AVT_RS17005 (AVT_17005) spoVAC 3334361..3334837 (-) 477 WP_000095399.1 stage V sporulation protein AC -
  AVT_RS17010 (AVT_17010) - 3334868..3335353 (-) 486 WP_087968660.1 YhcN/YlaJ family sporulation lipoprotein -
  AVT_RS17015 (AVT_17015) - 3335447..3335653 (-) 207 WP_000216166.1 DUF1657 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=771741 AVT_RS16980 WP_001049162.1 3331067..3331648(-) (clpP) [Bacillus tropicus strain JMT105-2]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=771741 AVT_RS16980 WP_001049162.1 3331067..3331648(-) (clpP) [Bacillus tropicus strain JMT105-2]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAACCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATTAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCGCAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGTGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCTAAACGTATCCTATTCTTACGTGAGAAACTAAACCAAATTCTTGCTGACCGTACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554