Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O8413_RS11745 Genome accession   NZ_CP115188
Coordinates   2521080..2522195 (+) Length   371 a.a.
NCBI ID   WP_283512572.1    Uniprot ID   -
Organism   Vibrio furnissii strain MT14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2516080..2527195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS11725 (O8413_11725) rsmB 2517013..2518293 (-) 1281 WP_283512570.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  O8413_RS11730 (O8413_11730) fmt 2518344..2519291 (-) 948 WP_158141274.1 methionyl-tRNA formyltransferase -
  O8413_RS11735 (O8413_11735) def 2519310..2519822 (-) 513 WP_004728778.1 peptide deformylase -
  O8413_RS11740 (O8413_11740) - 2519962..2521080 (+) 1119 WP_283512571.1 LysM peptidoglycan-binding domain-containing protein -
  O8413_RS11745 (O8413_11745) dprA 2521080..2522195 (+) 1116 WP_283512572.1 DNA-processing protein DprA Machinery gene
  O8413_RS11750 (O8413_11750) - 2522198..2522674 (+) 477 WP_004728783.1 DUF494 family protein -
  O8413_RS11755 (O8413_11755) - 2522700..2523278 (+) 579 WP_055466800.1 type I DNA topoisomerase -
  O8413_RS11760 (O8413_11760) - 2523312..2524445 (-) 1134 WP_283512573.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  O8413_RS11765 (O8413_11765) purE 2524449..2524934 (-) 486 WP_283512574.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  O8413_RS11770 (O8413_11770) - 2525133..2525690 (+) 558 WP_283512575.1 L-threonylcarbamoyladenylate synthase -
  O8413_RS11775 (O8413_11775) hemF 2525710..2526624 (+) 915 WP_004728793.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40759.57 Da        Isoelectric Point: 6.9900

>NTDB_id=768818 O8413_RS11745 WP_283512572.1 2521080..2522195(+) (dprA) [Vibrio furnissii strain MT14]
MLERDLAAWLAFSFAPQLGMHRLQRLASRHALHDLKQQLGREGEAAGLKAHQIHYLQQQADREVDACLLWCQQAEHRHIV
TPFHAHYPARLKEIAAAPPVLFVAGRLDTLRAPQIAIVGSRNASIDSQHIAHQFAAQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLGCIYPARHRTLAERIMASGAVVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAVEQSREVFVVPGSIRHPNCHGSNQLIRQGACLVQHIDHILDEVGPMMDWRRNQSQPEQTELFSCSYHEEELPFPEL
LANVGEEATPVDILANRTHIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=768818 O8413_RS11745 WP_283512572.1 2521080..2522195(+) (dprA) [Vibrio furnissii strain MT14]
ATGCTAGAACGTGATCTGGCGGCGTGGCTGGCATTTAGCTTTGCCCCCCAATTGGGAATGCATCGATTACAGCGTTTGGC
CAGCCGCCATGCGTTACATGACCTCAAACAACAGCTGGGTCGAGAAGGCGAAGCGGCCGGGCTCAAAGCTCATCAGATTC
ACTACCTACAGCAGCAAGCGGATCGCGAGGTTGATGCTTGCCTGCTTTGGTGTCAGCAAGCGGAACATCGCCACATCGTG
ACCCCATTTCATGCCCATTATCCGGCGCGATTAAAAGAGATTGCCGCGGCGCCTCCGGTGCTGTTTGTGGCCGGTCGGCT
TGACACGCTGCGCGCGCCACAAATCGCGATTGTGGGCAGCCGCAATGCCAGTATCGACAGTCAACACATCGCTCATCAAT
TTGCTGCGCAACTGGTCGAGCATGGTTTGGTGGTCACCAGTGGGTTGGCGCTGGGCATCGATGGTTATGCCCATGATGGC
GCCCTGAAAGCGGGCGGCGAAACCATCGCGGTATTGGGTTCAGGGTTGGGATGTATTTATCCGGCGCGTCATCGCACGTT
GGCGGAGCGGATTATGGCCAGTGGGGCGGTGGTGTCGGAGTTTCGCCCGGATGCCAAACCGAGGCCTGATCACTTTCCGC
GTCGCAATCGTATTATTAGTGGCTTGTCGTTGGGTGTTCTGGTGGTGGAAGCGGCCGAGAAAAGTGGCTCGCTCATCACC
GCGCGTTACGCTGTTGAACAGAGCCGCGAGGTGTTTGTGGTCCCGGGCTCGATTCGTCATCCCAATTGCCATGGCAGTAA
CCAGTTGATTCGGCAAGGCGCGTGTCTGGTTCAGCACATCGACCACATACTCGATGAGGTTGGCCCCATGATGGATTGGC
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTTGCTCATATCACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGAAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCCATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.943

98.922

0.623
  dprA Vibrio cholerae strain A1552

61.456

100

0.615
  dprA Glaesserella parasuis strain SC1401

44.681

100

0.453
  dprA Legionella pneumophila strain ERS1305867

42.308

98.113

0.415
  dprA Neisseria meningitidis strain C311

35.627

100

0.391
  dprA Neisseria meningitidis MC58

35.627

100

0.391
  dprA Neisseria gonorrhoeae MS11

34.236

100

0.375
  dprA Neisseria gonorrhoeae strain FA1090

33.744

100

0.369