Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpP   Type   Regulator
Locus tag   ORQ91_RS03085 Genome accession   NZ_CP115172
Coordinates   625989..626585 (-) Length   198 a.a.
NCBI ID   WP_024427684.1    Uniprot ID   -
Organism   Bacillus safensis strain BS-10L     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 620989..631585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS03060 (ORQ91_00617) - 621073..622050 (-) 978 WP_122631959.1 2-hydroxyacid dehydrogenase -
  ORQ91_RS03065 (ORQ91_00618) - 622603..623184 (+) 582 WP_122631975.1 beta-class carbonic anhydrase -
  ORQ91_RS03070 (ORQ91_00619) - 623222..624844 (+) 1623 WP_122631958.1 SulP family inorganic anion transporter -
  ORQ91_RS03075 (ORQ91_00620) - 624871..625212 (-) 342 WP_044333970.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  ORQ91_RS03080 (ORQ91_00621) - 625350..625928 (+) 579 WP_041107909.1 TIGR00730 family Rossman fold protein -
  ORQ91_RS03085 (ORQ91_00622) clpP 625989..626585 (-) 597 WP_024427684.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ORQ91_RS03095 - 627427..627603 (+) 177 WP_270127005.1 hypothetical protein -
  ORQ91_RS03100 (ORQ91_00624) - 627624..627998 (+) 375 WP_225315505.1 helix-turn-helix domain-containing protein -
  ORQ91_RS03105 (ORQ91_00625) - 628177..629409 (+) 1233 WP_151039870.1 Fic family protein -
  ORQ91_RS03110 (ORQ91_00626) - 629485..630309 (+) 825 WP_151039871.1 hypothetical protein -
  ORQ91_RS03115 (ORQ91_00627) - 630806..630988 (-) 183 WP_012011344.1 hypothetical protein -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 21832.00 Da        Isoelectric Point: 4.6835

>NTDB_id=768533 ORQ91_RS03085 WP_024427684.1 625989..626585(-) (clpP) [Bacillus safensis strain BS-10L]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=768533 ORQ91_RS03085 WP_024427684.1 625989..626585(-) (clpP) [Bacillus safensis strain BS-10L]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
AGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTCGGCGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATACAGAAGACCAAAAATAA

Domains


Predicted by InterproScan.

(13-192)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

93.939

100

0.939

  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652

  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571

  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571

  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551

  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545

  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545

  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545

  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545

  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54

  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54

  clpP Streptococcus mutans UA159

54.639

97.98

0.535

  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53