Detailed information NTG0767362

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: O2T12_RS06250
• Genome accession: NZ_CP114886
• Coordinates: 1458808..1460028 (-)
• Length: 406 a.a.
• NCBI ID: WP_269673042.1
• Uniprot ID: -
• Organism: Endozoicomonas sp. GU-1 strain Ap1-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1453808..1465028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O2T12_RS06240 (O2T12_06240)	ushA	1456866..1458464 (-)	1599	WP_269673040.1	bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA	-
O2T12_RS06245 (O2T12_06245)	-	1458577..1458708 (+)	132	WP_269673041.1	hypothetical protein	-
O2T12_RS06250 (O2T12_06250)	pilC	1458808..1460028 (-)	1221	WP_269673042.1	type II secretion system F family protein	Machinery gene
O2T12_RS06255 (O2T12_06255)	-	1460355..1461158 (-)	804	WP_269673043.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
O2T12_RS06260 (O2T12_06260)	rsmA	1461176..1461982 (-)	807	WP_269673044.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
O2T12_RS06265 (O2T12_06265)	-	1462310..1464820 (-)	2511	WP_269673045.1	CoA transferase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 43479.10 Da
• Isoelectric Point: 9.0557

>NTDB_id=767362 O2T12_RS06250 WP_269673042.1 1458808..1460028(-) (pilC) [Endozoicomonas sp. GU-1 strain Ap1-3]
MAAKPTKTATFVWQGKDKAGKKIKGEMQSASAALVKAELRKQGILATKVSKKSLSLSLGGGGKVKPMDIALFTRQMATMM
KAGVPLLQAFDITSGGIEKEAMRNLVGKIKNEVASGSTFADSLRQHPDYFDDLYCNLVASGEQSGALETLLDRIATYKEK
TEALKAKIKKAMNYPIAVVLIAMIVTVILLVKVVPQFEEVFQGFGAELPAFTQVVINISEVVQEYWHIVLGALVAGGFLI
SRTLKSSKAARDGLDRLMLKLPIIGEILDKSAVARFGRTLSTTFAAGVPLVDALDSVAGAAGNVVYANAARKIKEDVSTG
QQLQFAMKSTGIFPPMAIQMVSIGEESGSLDEMLDKVATFYEEEVDNMVDGMTSLMEPIIMSVLGVLVGGLIVAMYLPIF
QLGSVV

Nucleotide

• Length: 1221 bp

>NTDB_id=767362 O2T12_RS06250 WP_269673042.1 1458808..1460028(-) (pilC) [Endozoicomonas sp. GU-1 strain Ap1-3]
ATGGCCGCAAAACCAACCAAAACAGCCACCTTTGTCTGGCAGGGCAAAGATAAAGCCGGCAAAAAGATCAAAGGGGAAAT
GCAAAGTGCCAGTGCTGCGCTGGTCAAGGCTGAGCTTAGAAAACAGGGCATCCTGGCGACCAAAGTCTCTAAAAAAAGCC
TCTCCCTGAGCCTTGGCGGTGGGGGCAAAGTCAAGCCCATGGACATAGCCCTGTTCACCCGCCAGATGGCAACCATGATG
AAGGCAGGGGTACCACTGCTTCAGGCCTTTGACATTACCTCCGGCGGTATCGAGAAAGAGGCCATGAGAAATCTGGTTGG
CAAGATCAAGAATGAAGTAGCCTCAGGCAGCACTTTTGCCGACTCCCTCAGACAACACCCGGATTATTTTGACGACCTGT
ACTGCAATCTCGTCGCCTCTGGTGAACAGTCCGGAGCACTGGAGACATTGCTGGATCGAATCGCTACCTATAAAGAAAAA
ACCGAAGCACTCAAGGCAAAAATCAAGAAAGCGATGAACTATCCAATTGCCGTAGTGCTTATTGCGATGATCGTTACCGT
CATCCTGCTGGTGAAGGTGGTCCCTCAATTTGAAGAGGTTTTTCAGGGCTTCGGTGCTGAGCTACCCGCCTTTACCCAGG
TTGTCATCAACATATCAGAGGTTGTCCAGGAATATTGGCATATCGTCCTAGGCGCTTTGGTCGCTGGCGGCTTCCTGATA
TCACGGACACTGAAGTCATCCAAGGCAGCCAGAGATGGTCTGGATCGCCTGATGCTGAAGCTGCCGATTATTGGTGAAAT
TCTGGATAAATCCGCCGTTGCCCGTTTTGGCCGAACCCTGTCAACCACCTTTGCCGCCGGGGTTCCCCTGGTCGATGCGC
TCGACTCGGTCGCCGGTGCTGCTGGCAATGTCGTTTATGCCAATGCCGCTAGAAAAATTAAAGAAGATGTATCCACCGGT
CAGCAGCTACAGTTTGCCATGAAAAGCACCGGGATATTCCCGCCTATGGCGATACAAATGGTCTCTATCGGTGAGGAATC
AGGCTCTCTGGATGAGATGCTTGATAAAGTCGCCACGTTCTATGAAGAAGAAGTGGATAATATGGTTGATGGCATGACCA
GCCTTATGGAACCCATCATCATGTCGGTGCTGGGTGTACTGGTCGGTGGCCTGATTGTGGCAATGTATCTGCCAATCTTC
CAGTTGGGGTCTGTTGTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (278-398)

• Type II secretion system (T2SS), protein F (T2SSF) (72-195)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	68.966	100	0.69
pilC	Acinetobacter baylyi ADP1	60.097	100	0.608
pilC	Acinetobacter baumannii D1279779	60.302	98.03	0.591
pilC	Legionella pneumophila strain ERS1305867	56.391	98.276	0.554
pilG	Neisseria meningitidis 44/76-A	45.185	99.754	0.451
pilG	Neisseria gonorrhoeae MS11	44.938	99.754	0.448
pilC	Vibrio cholerae strain A1552	44.11	98.276	0.433
pilC	Vibrio campbellii strain DS40M4	41.687	99.261	0.414