Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   O6R09_RS07120 Genome accession   NZ_CP114883
Coordinates   1391337..1391927 (-) Length   196 a.a.
NCBI ID   WP_154454564.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386337..1396927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS07090 (O6R09_07090) - 1386608..1387372 (-) 765 WP_154454570.1 ABC transporter ATP-binding protein -
  O6R09_RS07095 (O6R09_07095) - 1387372..1388325 (-) 954 WP_154454569.1 branched-chain amino acid ABC transporter permease -
  O6R09_RS07100 (O6R09_07100) - 1388329..1389213 (-) 885 WP_154454568.1 branched-chain amino acid ABC transporter permease -
  O6R09_RS07105 (O6R09_07105) - 1389265..1390446 (-) 1182 WP_235280680.1 ABC transporter substrate-binding protein -
  O6R09_RS07110 (O6R09_07110) - 1390550..1390801 (-) 252 WP_154454566.1 DUF2129 domain-containing protein -
  O6R09_RS07115 (O6R09_07115) - 1390805..1391233 (-) 429 WP_235280830.1 YlbF family regulator -
  O6R09_RS07120 (O6R09_07120) clpP 1391337..1391927 (-) 591 WP_154454564.1 ATP-dependent Clp protease proteolytic subunit Regulator
  O6R09_RS07125 (O6R09_07125) upp 1392088..1392717 (-) 630 WP_154454563.1 uracil phosphoribosyltransferase -
  O6R09_RS07130 (O6R09_07130) - 1392826..1393833 (-) 1008 WP_269725562.1 helix-turn-helix domain-containing protein -
  O6R09_RS07135 (O6R09_07135) - 1393870..1394076 (-) 207 Protein_1350 helix-turn-helix domain-containing protein -
  O6R09_RS07140 (O6R09_07140) ant(9) 1394256..1395044 (-) 789 WP_055275145.1 aminoglycoside nucleotidyltransferase ANT(9) -
  O6R09_RS07145 (O6R09_07145) - 1395176..1395703 (-) 528 WP_002294507.1 phosphoribosyltransferase family protein -
  O6R09_RS07150 (O6R09_07150) - 1395747..1396610 (-) 864 WP_002294505.1 aminoglycoside nucleotidyltransferase ANT(6)-Ia -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21546.57 Da        Isoelectric Point: 4.3383

>NTDB_id=767345 O6R09_RS07120 WP_154454564.1 1391337..1391927(-) (clpP) [Streptococcus alactolyticus strain LGM]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRQNLEQILADNSGQ
PLEKVHLDAERDNWMSAQETLEYGFIDEIMVNNELN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=767345 O6R09_RS07120 WP_154454564.1 1391337..1391927(-) (clpP) [Streptococcus alactolyticus strain LGM]
ATGATTCCTGTAGTAATTGAACAAACAAGCCGCGGTGAGCGTTCATACGATATTTATTCACGTTTGTTGAAAGACCGTAT
TATCATGTTGACTGGACCTGTTGAAGATAATATGGCAAATTCAATCATTGCTCAACTCTTATTCCTTGACGCCCAAGACA
ATACTAAAGACATTTACCTCTATGTCAATACTCCTGGTGGTTCAGTATCTGCTGGTTTGGCGATTGTGGATACAATGAAT
TTCATCAAATCAGATGTTCAAACTATCGTTATGGGTATGGCAGCATCTATGGGTACCATCATCGCCTCTTCAGGTGCTAA
AGGCAAACGTTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACTGGTGGCGGTACACAACAAA
CAGATATGGCTATTGCTGCTGAACACCTTTTGAAAACACGTCAAAACTTAGAACAAATTTTGGCGGATAATTCAGGACAA
CCGCTTGAAAAAGTTCACCTTGATGCTGAACGTGATAACTGGATGAGTGCCCAAGAAACCCTTGAATATGGCTTCATCGA
TGAAATCATGGTCAACAACGAATTAAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

96.41

99.49

0.959
  clpP Streptococcus thermophilus LMD-9

96.41

99.49

0.959
  clpP Streptococcus pneumoniae Rx1

93.367

100

0.934
  clpP Streptococcus pneumoniae D39

93.367

100

0.934
  clpP Streptococcus pneumoniae R6

93.367

100

0.934
  clpP Streptococcus pneumoniae TIGR4

93.367

100

0.934
  clpP Streptococcus pyogenes JRS4

89.286

100

0.893
  clpP Streptococcus pyogenes MGAS315

89.286

100

0.893
  clpP Streptococcus mutans UA159

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.245

100

0.872
  clpP Lactococcus lactis subsp. cremoris KW2

86.735

100

0.867
  clpP Bacillus subtilis subsp. subtilis str. 168

59.278

98.98

0.587
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.474

96.939

0.577