Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   O6R09_RS02845 Genome accession   NZ_CP114883
Coordinates   521530..522198 (+) Length   222 a.a.
NCBI ID   WP_167829303.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516530..527198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS02820 (O6R09_02820) - 516888..517949 (+) 1062 WP_269725747.1 DUF1542 domain-containing protein -
  O6R09_RS02825 (O6R09_02825) - 518093..519399 (-) 1307 Protein_488 ISL3 family transposase -
  O6R09_RS02830 (O6R09_02830) - 519544..519819 (-) 276 WP_168261468.1 GIY-YIG nuclease family protein -
  O6R09_RS02835 (O6R09_02835) - 519803..520564 (-) 762 WP_154455097.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  O6R09_RS02840 (O6R09_02840) - 520681..521427 (+) 747 WP_167829302.1 lysophospholipid acyltransferase family protein -
  O6R09_RS02845 (O6R09_02845) comEA 521530..522198 (+) 669 WP_167829303.1 helix-hairpin-helix domain-containing protein Machinery gene
  O6R09_RS02850 (O6R09_02850) comEC/celB 522191..524422 (+) 2232 WP_269725748.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  O6R09_RS02855 (O6R09_02855) holA 524471..525508 (+) 1038 WP_154455095.1 DNA polymerase III subunit delta -
  O6R09_RS02860 (O6R09_02860) sodA 525595..526203 (+) 609 WP_154455114.1 superoxide dismutase SodA -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23286.15 Da        Isoelectric Point: 4.7171

>NTDB_id=767326 O6R09_RS02845 WP_167829303.1 521530..522198(+) (comEA) [Streptococcus alactolyticus strain LGM]
MLETIKAKVSEHKVLAASFGTVFAMLLAFFVWSQVTQPKVEAESSLPVISSQLASSSSEQVKSKTASSQSQTTSGKIVAD
IKGAVTNEGVYELPAGSRVTDLVKMAGGFTEEADRKSVNLAEKVSDEAVVYVAKIGEEVSPATKFPSTASGSQTEAATGT
INLNTATATELQTISGIGAKRAQDIIDYREANGGFTSVEELKNVSGIGDKTLEKLKSEVSID

Nucleotide


Download         Length: 669 bp        

>NTDB_id=767326 O6R09_RS02845 WP_167829303.1 521530..522198(+) (comEA) [Streptococcus alactolyticus strain LGM]
ATTTTGGAAACTATCAAAGCAAAAGTATCAGAGCATAAGGTCTTGGCAGCGAGTTTTGGGACCGTGTTTGCCATGTTGCT
GGCTTTTTTTGTTTGGTCACAAGTCACTCAGCCTAAGGTGGAAGCCGAAAGCTCTTTGCCTGTCATTAGTAGCCAGTTGG
CAAGCAGCAGTTCAGAGCAGGTCAAAAGCAAAACGGCGAGCAGCCAGTCTCAAACGACAAGTGGCAAAATAGTTGCGGAC
ATCAAAGGGGCAGTGACCAATGAAGGTGTGTATGAGTTGCCTGCTGGCAGTCGGGTGACTGATTTGGTCAAAATGGCAGG
TGGCTTCACGGAAGAAGCAGACCGAAAATCTGTGAATTTAGCTGAAAAAGTAAGCGATGAAGCTGTGGTTTATGTGGCAA
AGATTGGGGAAGAGGTAAGTCCAGCCACAAAATTCCCCTCAACGGCCAGCGGTAGCCAGACAGAAGCTGCTACTGGTACC
ATCAATTTGAACACGGCGACAGCAACAGAACTTCAGACCATTTCAGGTATTGGGGCCAAACGTGCGCAAGATATCATTGA
TTACCGTGAGGCAAATGGCGGTTTTACTTCGGTTGAAGAATTGAAAAATGTGTCAGGTATCGGAGATAAGACCCTAGAAA
AACTCAAATCAGAGGTGAGCATTGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(159-219)

SLBB domain (SLBB)

(79-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

46.32

100

0.482
  comEA/celA/cilE Streptococcus pneumoniae D39

44.248

100

0.45
  comEA/celA/cilE Streptococcus pneumoniae Rx1

44.248

100

0.45
  comEA/celA/cilE Streptococcus pneumoniae R6

44.248

100

0.45
  comEA/celA/cilE Streptococcus mitis NCTC 12261

45.045

100

0.45
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

45.045

100

0.45
  comEA/celA/cilE Streptococcus mitis SK321

44.144

100

0.441
  comEA Bacillus subtilis subsp. subtilis str. 168

39.45

98.198

0.387