Detailed information NTG0767309

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: O6R09_RS00705
• Genome accession: NZ_CP114883
• Coordinates: 104058..104519 (+)
• Length: 153 a.a.
• NCBI ID: WP_269725666.1
• Uniprot ID: -
• Organism: Streptococcus alactolyticus strain LGM
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 99058..109519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O6R09_RS00675 (O6R09_00675)	-	100795..101103 (+)	309	WP_154454148.1	DUF1033 family protein	-
O6R09_RS00680 (O6R09_00680)	comGA/cglA	101235..102176 (+)	942	WP_269725665.1	competence type IV pilus ATPase ComGA	Machinery gene
O6R09_RS00685 (O6R09_00685)	comYB	102058..103143 (+)	1086	WP_374041727.1	competence type IV pilus assembly protein ComGB	Machinery gene
O6R09_RS00690 (O6R09_00690)	comYC	103143..103436 (+)	294	WP_235280789.1	competence type IV pilus major pilin ComGC	Machinery gene
O6R09_RS00695 (O6R09_00695)	comGD	103399..103851 (+)	453	WP_154454146.1	competence type IV pilus minor pilin ComGD	-
O6R09_RS00700 (O6R09_00700)	comGE	103874..104098 (+)	225	WP_154454160.1	competence type IV pilus minor pilin ComGE	-
O6R09_RS00705 (O6R09_00705)	comYF	104058..104519 (+)	462	WP_269725666.1	competence type IV pilus minor pilin ComGF	Machinery gene
O6R09_RS00710 (O6R09_00710)	comGG	104491..104817 (+)	327	WP_154454144.1	competence type IV pilus minor pilin ComGG	-
O6R09_RS00715 (O6R09_00715)	comYH	104892..105848 (+)	957	WP_154454143.1	class I SAM-dependent methyltransferase	Machinery gene
O6R09_RS00720 (O6R09_00720)	-	105900..107114 (+)	1215	WP_154454142.1	acetate kinase	-
O6R09_RS00725 (O6R09_00725)	-	107235..107873 (+)	639	WP_154454141.1	CPBP family intramembrane glutamic endopeptidase	-
O6R09_RS00730 (O6R09_00730)	proC	107907..108677 (-)	771	WP_235280787.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 17444.91 Da
• Isoelectric Point: 9.5019

>NTDB_id=767309 O6R09_RS00705 WP_269725666.1 104058..104519(+) (comYF) [Streptococcus alactolyticus strain LGM]
MKEKNGYYTLKKTRLKAFTLLECLVALLVIAGTVLVYDGLACSVKANIHYLSNNQEEEWLLFSQQLRSELEGYQLDRVAS
NKLYVTKANQHLAFGQSNSHDFRKTNASGRGYQPMLFGLQSSSISQDGQQVTIKLGFKNRMEREFVYTFKTEG

Nucleotide

• Length: 462 bp

>NTDB_id=767309 O6R09_RS00705 WP_269725666.1 104058..104519(+) (comYF) [Streptococcus alactolyticus strain LGM]
ATGAAGGAAAAAAACGGATATTACACATTAAAAAAGACTAGACTAAAAGCATTCACCCTTTTAGAATGCTTGGTGGCGTT
GCTGGTTATCGCAGGAACGGTCTTGGTTTATGACGGTTTAGCATGTTCGGTCAAAGCCAATATCCACTACCTATCCAACA
ATCAGGAAGAAGAGTGGCTTTTATTTTCCCAGCAATTACGCTCGGAACTAGAGGGGTACCAATTAGACAGAGTAGCATCT
AATAAACTGTATGTCACTAAAGCCAATCAGCACCTAGCTTTTGGTCAATCTAACAGCCATGATTTTCGCAAAACAAACGC
TTCTGGTCGTGGTTACCAACCCATGCTTTTTGGCTTGCAATCATCGAGCATATCACAAGACGGTCAGCAAGTAACGATCA
AACTTGGCTTCAAAAATCGTATGGAGAGAGAATTTGTTTACACTTTTAAGACGGAAGGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (46-140)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	61.594	90.196	0.556
comYF	Streptococcus mutans UA159	60.87	90.196	0.549
comGF/cglF	Streptococcus pneumoniae D39	42.282	97.386	0.412
comGF/cglF	Streptococcus pneumoniae Rx1	42.282	97.386	0.412
comGF/cglF	Streptococcus pneumoniae R6	42.282	97.386	0.412
comGF/cglF	Streptococcus pneumoniae TIGR4	42.282	97.386	0.412
comGF	Lactococcus lactis subsp. cremoris KW2	44.928	90.196	0.405
comGF/cglF	Streptococcus mitis NCTC 12261	40.972	94.118	0.386
comGF/cglF	Streptococcus mitis SK321	40.278	94.118	0.379