Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   O4J62_RS11995 Genome accession   NZ_CP114601
Coordinates   2498795..2500927 (-) Length   710 a.a.
NCBI ID   WP_323712883.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2493795..2505927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS11980 (O4J62_11980) - 2496261..2497106 (-) 846 WP_323712567.1 hypothetical protein -
  O4J62_RS11985 (O4J62_11985) aroB 2497117..2498196 (-) 1080 WP_180159032.1 3-dehydroquinate synthase -
  O4J62_RS11990 (O4J62_11990) aroK 2498227..2498757 (-) 531 WP_323712568.1 shikimate kinase AroK -
  O4J62_RS11995 (O4J62_11995) pilQ 2498795..2500927 (-) 2133 WP_323712883.1 type IV pilus secretin PilQ family protein Machinery gene
  O4J62_RS12000 (O4J62_12000) pilP 2500987..2501511 (-) 525 WP_323712569.1 pilus assembly protein PilP Machinery gene
  O4J62_RS12005 (O4J62_12005) comO 2501511..2502221 (-) 711 WP_104852651.1 type 4a pilus biogenesis protein PilO Machinery gene
  O4J62_RS12010 (O4J62_12010) pilN 2502218..2502853 (-) 636 WP_323712570.1 PilN domain-containing protein Machinery gene
  O4J62_RS12015 (O4J62_12015) pilM 2502853..2503911 (-) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 76729.85 Da        Isoelectric Point: 5.3394

>NTDB_id=766814 O4J62_RS11995 WP_323712883.1 2498795..2500927(-) (pilQ) [Acinetobacter towneri strain TT1-3_T]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLILDFDKAQQTLKQNSV
AVATKEASSVEVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSTTATPMAAVTAQRSAQGVSNIGFQRGGEGEGQVV
IDLLGSNTPVDVQQQGSKIVVRTLGNKVPAHLARRLNVNDFATPVSTIDAHNDGSNGVITIQAAGSYEYMAYQAEDKLTI
SLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRSGSNTNDPLGDSVG
SLLSPRGTVSVDPRTNTLIINDTSAKIDQIRQMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHLLV
GGSDTTLWNLREPEKDSDTGGWKYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVL
TADKQNAKVASGTQIPYQSSEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMQLNITSDSPGAPTPTGQLTINKNAVN
TNVLVDNGETVVLGGIFEQQTANSQTKVPFLGDIPYIGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=766814 O4J62_RS11995 WP_323712883.1 2498795..2500927(-) (pilQ) [Acinetobacter towneri strain TT1-3_T]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCAGTCGCAATGGCGGTGATGCAAGTGGCCAATGCCCAAGTGAGCAT
TACCAACATCGTACCCATGCAAATTCCAGGACAAGGCACGGAAATTCGTGTCATGTTTAATGGTTTGCCACCTCAACCTG
CTGCATATCAGCTGGAACAACCTTCCCGCTTGATTTTAGATTTTGATAAAGCGCAACAAACGCTGAAGCAAAACAGCGTT
GCAGTCGCAACCAAAGAAGCCAGCTCTGTAGAGGTAAGCTCAGATGCACAGCGTTCACGTTTAACTGTGAACTTGGCCGA
TGCGGGCGCATTTACCACGCGTGTTGAAGGCAACACCTTTATTTTAAAAATCAACTCAACTACGGCAACGCCTATGGCTG
CCGTGACTGCTCAACGTAGCGCACAAGGCGTATCCAATATTGGTTTCCAGCGTGGCGGTGAAGGTGAAGGTCAGGTGGTG
ATTGATCTACTCGGTAGCAATACGCCTGTAGATGTGCAGCAGCAAGGCAGCAAAATTGTGGTACGTACTTTAGGCAATAA
AGTACCTGCACATTTAGCACGTCGTTTAAATGTAAATGACTTTGCAACACCTGTATCGACCATTGATGCACACAATGATG
GCAGCAATGGCGTGATTACTATTCAAGCTGCAGGCAGCTATGAATATATGGCATATCAGGCAGAAGACAAGCTAACCATC
AGCTTAAAACGCCCTGTCGATAAAAACCCGTTTAAACCGCGTGCAGCGCAAAGCTATACAGGCAAAAAGATTTCACTGGA
TTTCCAAGACATCGAAGTGCGTCGTGTATTGCAGTTATTGGCTGATTTCACAGGCATTAACATGGTGGCAGCAGACACTG
TGCAAGGCAACATTACCTTACGTTTAAAAGATGTACCTTGGGATCAGGCTTTAGATATTATCCTGAAAACCAAAAACTTA
GATAAGCGTCGTAATGGCAACGTGATTTGGATTGCACCTGTTTCTGAATTGATTAAAGCCGAAGAAGAAGAAGCCAAAGC
GATTGCACAAAGTGTCAAGTTGGCGCCATTACAAACTGAATATATTCAATTGAACTATGCCAAAGCTGCAGATATTGAGA
AGCTGATTACCGACGGTAAAAACGCTTCTAACTCACGCAGTGGTTCTAATACAAATGACCCATTAGGTGATAGCGTGGGC
AGTTTGCTGAGCCCACGTGGTACAGTGTCGGTAGATCCACGTACCAATACCTTAATCATTAATGATACTTCAGCAAAAAT
TGATCAGATTCGTCAAATGATTGATTTGCTAGATGTGTCTGTGAAGCAAGTGATGATTGAAGCACGTATTGTTCGTGCAA
CCACAGACTTCACCAAAGAAATGGGGGTGAAGTGGGGCATCTTGTCACAAGGGATTACCAACAATAATCACTTGTTGGTG
GGTGGTAGTGACACGACCTTGTGGAACTTGCGTGAACCAGAAAAAGATAGTGATACGGGTGGTTGGAAGTACGAAATTGA
ACGGCCACAAAACCTGAATGTCGATTTGGGTGTGACCAGTCCTGGTGCTAGCCGTATTGCATTTGGTTTAATCAGCTTGT
CTGACTTTATGCTCGATTTGGAGTTGTCTGCATTACAAGCAGATGGTTACGGTGAAGTGATTTCGACACCAAAAGTCCTG
ACTGCAGATAAGCAAAATGCCAAAGTGGCATCGGGTACGCAAATTCCGTATCAATCTTCTGAAGGTGGTGGTGTCAATGC
TGTATCTACCACAGAATTCATTGATGCGACTTTAAGTTTGGATGTGACCCCAAGTATTACGCCTGACGGTAAAGTCCAAA
TGCAATTAAATATCACCAGTGACTCGCCAGGTGCACCAACACCTACAGGTCAGCTCACCATTAATAAGAACGCCGTGAAT
ACCAACGTTTTGGTGGATAATGGTGAAACTGTGGTCTTGGGTGGTATTTTTGAGCAACAAACGGCTAACTCACAAACCAA
AGTTCCATTCTTGGGCGATATTCCTTATATCGGACGTTTATTCCGTAAAGATATCAAGTCGGACAACAAACGTGAGTTGC
TGATTTTTGTTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-443)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(544-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.657

100

0.782
  pilQ Acinetobacter baumannii strain A118

76.519

100

0.78
  comQ Acinetobacter baylyi ADP1

73.566

100

0.741
  pilQ Pseudomonas aeruginosa PAK

40.629

98.451

0.4
  pilQ Legionella pneumophila strain ERS1305867

37.784

99.155

0.375
  pilQ Legionella pneumophila strain Lp02

37.784

99.155

0.375