Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   O4J62_RS12005 Genome accession   NZ_CP114601
Coordinates   2501511..2502221 (-) Length   236 a.a.
NCBI ID   WP_104852651.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2496511..2507221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS11985 (O4J62_11985) aroB 2497117..2498196 (-) 1080 WP_180159032.1 3-dehydroquinate synthase -
  O4J62_RS11990 (O4J62_11990) aroK 2498227..2498757 (-) 531 WP_323712568.1 shikimate kinase AroK -
  O4J62_RS11995 (O4J62_11995) pilQ 2498795..2500927 (-) 2133 WP_323712883.1 type IV pilus secretin PilQ family protein Machinery gene
  O4J62_RS12000 (O4J62_12000) pilP 2500987..2501511 (-) 525 WP_323712569.1 pilus assembly protein PilP Machinery gene
  O4J62_RS12005 (O4J62_12005) comO 2501511..2502221 (-) 711 WP_104852651.1 type 4a pilus biogenesis protein PilO Machinery gene
  O4J62_RS12010 (O4J62_12010) pilN 2502218..2502853 (-) 636 WP_323712570.1 PilN domain-containing protein Machinery gene
  O4J62_RS12015 (O4J62_12015) pilM 2502853..2503911 (-) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  O4J62_RS12020 (O4J62_12020) ponA 2504081..2506633 (+) 2553 WP_323712571.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26575.09 Da        Isoelectric Point: 4.7532

>NTDB_id=766816 O4J62_RS12005 WP_104852651.1 2501511..2502221(-) (comO) [Acinetobacter towneri strain TT1-3_T]
MSLDEFDEVNQEAAVAPKKKMTVEKFFQQFNTLDPNNYGGWPLSVKITCWIFIIFLIAALGYFVVIKPKLDAIAAAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADTQTAANTAGGAQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=766816 O4J62_RS12005 WP_104852651.1 2501511..2502221(-) (comO) [Acinetobacter towneri strain TT1-3_T]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGAAGCTGCTGTTGCTCCGAAAAAGAAAATGACCGTTGAGAAGTTTTT
TCAGCAGTTTAATACCCTTGATCCAAATAACTATGGTGGTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTCATTA
TTTTCTTAATTGCGGCACTAGGTTACTTTGTTGTAATTAAGCCGAAGTTAGATGCCATTGCTGCAGCGCATGCACAAGAA
CAGAATTTATTAAACGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAACAATATCAAGCGCAATTACAAGAAAT
GGAAGCTAACTTTAACCAGCAGCTTGAGCAATTGCCGAAAGAAACTGAAATTCCAGGCTTGGTTGAAGACATCAACGTTA
CAGGTGTTAATTCAGGCTTGAAGTTTAAAAACATTCGCTTAGAGAATGAGATCAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCGATTGAAGCAACAGGTGACTATCACGCTTTTGGTTCTTTTGTAAGTGGTACTGCAGCATTGCCGCGTATTGTGAC
TATGCATGATTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACAGATATTCCACAAGTGACATATAAAGCGCAAG
CGAAGACATATCGTTACGTGGGTAGTGCAGATACACAAACTGCGGCTAACACTGCTGGAGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

70.902

100

0.733
  pilO Acinetobacter baumannii D1279779

72.34

99.576

0.72