Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N7E60_RS13765 Genome accession   NZ_CP114584
Coordinates   2946053..2947162 (-) Length   369 a.a.
NCBI ID   WP_077458109.1    Uniprot ID   -
Organism   Salinivibrio proteolyticus strain TGB10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2941053..2952162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E60_RS13730 (N7E60_13730) - 2941178..2941438 (-) 261 WP_269597764.1 DUF1488 domain-containing protein -
  N7E60_RS13735 (N7E60_13735) aroE 2941435..2942259 (-) 825 WP_269597765.1 shikimate dehydrogenase -
  N7E60_RS13740 (N7E60_13740) hemF 2942263..2943180 (-) 918 WP_269597767.1 oxygen-dependent coproporphyrinogen oxidase -
  N7E60_RS13745 (N7E60_13745) purE 2943359..2943841 (+) 483 WP_069362358.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  N7E60_RS13750 (N7E60_13750) - 2943846..2944994 (+) 1149 WP_167314960.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  N7E60_RS13755 (N7E60_13755) - 2944991..2945548 (-) 558 WP_269597768.1 type I DNA topoisomerase -
  N7E60_RS13760 (N7E60_13760) - 2945577..2946050 (-) 474 WP_096630346.1 DUF494 family protein -
  N7E60_RS13765 (N7E60_13765) dprA 2946053..2947162 (-) 1110 WP_077458109.1 DNA-processing protein DprA Machinery gene
  N7E60_RS13770 (N7E60_13770) - 2947152..2948213 (-) 1062 WP_269597770.1 LysM peptidoglycan-binding domain-containing protein -
  N7E60_RS13775 (N7E60_13775) def 2948331..2948843 (+) 513 WP_077458105.1 peptide deformylase -
  N7E60_RS13780 (N7E60_13780) fmt 2948851..2949795 (+) 945 WP_077641437.1 methionyl-tRNA formyltransferase -
  N7E60_RS13785 (N7E60_13785) rsmB 2949911..2951194 (+) 1284 WP_269597772.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40108.10 Da        Isoelectric Point: 6.7706

>NTDB_id=766608 N7E60_RS13765 WP_077458109.1 2946053..2947162(-) (dprA) [Salinivibrio proteolyticus strain TGB10]
MRDKSLRGWLILTQVPRLRVSQRRALLAKVPIDALSEQTAHDLAAVGLTAEQCQAVTHPNHAMIERSLEWARQENCHLIG
FDHPAYPALLREIARPPLLLYVQGDLTCLAMPQLAMVGSRHATPQGLETAYQFAKQLVEHGVAITSGLALGIDGRAHKGA
LEGHGKTLAVLGSGLANVYPARHRALAERIEAQGALVSEFWPEAPPRAEHFPRRNRLISGLSAGVLVVEAAPQSGSLITA
RYALEQNRDVFAIPGPIDQVQSRGCHQLIKQGATLTDCVDDILHEIDSLISFAACQQTELFSDAPKLDTHEGLPFPELLA
NVGTKATCVDVLAERCNQPVHEIMMQLLDLELQGLVAAVPGGYVRTRRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=766608 N7E60_RS13765 WP_077458109.1 2946053..2947162(-) (dprA) [Salinivibrio proteolyticus strain TGB10]
ATGCGCGATAAATCCCTGCGAGGGTGGTTGATACTGACCCAAGTTCCGCGGTTGCGCGTTTCGCAGCGACGCGCGCTGTT
GGCCAAAGTGCCCATCGATGCGTTGAGTGAGCAAACTGCTCATGATCTTGCCGCGGTTGGTTTAACCGCTGAGCAGTGTC
AGGCCGTCACGCATCCCAATCATGCCATGATTGAGCGCAGCCTTGAGTGGGCGAGGCAAGAGAATTGCCACCTGATTGGC
TTTGACCACCCAGCTTACCCTGCATTACTCCGAGAAATCGCACGGCCGCCTTTGCTCTTGTATGTGCAAGGCGATCTGAC
TTGCTTGGCGATGCCTCAATTGGCGATGGTGGGCAGTCGTCACGCGACCCCGCAAGGTTTAGAAACGGCGTATCAATTTG
CTAAACAATTGGTTGAGCATGGTGTTGCGATTACCAGTGGGCTTGCGCTAGGTATCGATGGCCGAGCACACAAAGGCGCT
CTTGAAGGCCACGGCAAGACATTAGCAGTGCTAGGAAGCGGGCTTGCCAATGTGTATCCTGCACGACATCGCGCATTGGC
TGAGCGGATTGAAGCACAAGGCGCACTGGTCTCAGAGTTCTGGCCAGAGGCTCCGCCAAGGGCTGAGCACTTTCCGCGGC
GCAATCGACTGATCAGTGGGTTGTCGGCAGGCGTATTAGTGGTAGAGGCCGCGCCACAAAGTGGGTCGCTGATCACGGCA
CGTTATGCACTTGAGCAAAATCGTGATGTGTTTGCGATTCCTGGGCCCATTGACCAAGTCCAGTCGCGTGGGTGCCACCA
ATTGATTAAACAAGGGGCCACACTCACAGACTGTGTCGATGATATCTTGCATGAAATTGATAGCCTGATAAGCTTCGCCG
CGTGTCAACAAACCGAATTATTTAGTGACGCGCCTAAGTTAGATACACATGAAGGATTGCCATTTCCTGAGCTGTTGGCT
AACGTAGGTACTAAAGCGACGTGTGTCGACGTACTGGCTGAGCGCTGCAACCAACCGGTTCACGAAATCATGATGCAGTT
GTTAGACTTAGAACTCCAGGGGCTTGTAGCAGCAGTACCCGGTGGCTATGTCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-275)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

52.575

100

0.526
  dprA Vibrio cholerae strain A1552

50.535

100

0.512
  dprA Glaesserella parasuis strain SC1401

44.444

100

0.444
  dprA Legionella pneumophila strain ERS1305867

45.672

90.786

0.415
  dprA Haemophilus influenzae Rd KW20

44.543

91.87

0.409
  dprA Acinetobacter baumannii D1279779

40.663

89.973

0.366
  dprA Acinetobacter baumannii strain A118

40.361

89.973

0.363
  dprA Acinetobacter baylyi ADP1

38.551

93.496

0.36