Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OZ656_RS03925 Genome accession   NZ_CP114373
Coordinates   842882..844999 (+) Length   705 a.a.
NCBI ID   WP_379944972.1    Uniprot ID   -
Organism   Marinobacter sp. LM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 837882..849999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ656_RS03905 (OZ656_03890) pilM 840078..841142 (+) 1065 WP_036149326.1 pilus assembly protein PilM Machinery gene
  OZ656_RS03910 (OZ656_03895) - 841142..841705 (+) 564 WP_224851271.1 PilN domain-containing protein -
  OZ656_RS03915 (OZ656_03900) - 841705..842316 (+) 612 WP_278350790.1 type 4a pilus biogenesis protein PilO -
  OZ656_RS03920 (OZ656_03905) - 842319..842861 (+) 543 WP_199456780.1 pilus assembly protein PilP -
  OZ656_RS03925 (OZ656_03910) pilQ 842882..844999 (+) 2118 WP_379944972.1 type IV pilus secretin PilQ Machinery gene
  OZ656_RS03930 (OZ656_03915) aroK 845138..845728 (+) 591 WP_379944973.1 shikimate kinase AroK -
  OZ656_RS03935 (OZ656_03920) aroB 845697..846794 (+) 1098 WP_379944974.1 3-dehydroquinate synthase -
  OZ656_RS03940 (OZ656_03925) - 846827..848338 (+) 1512 WP_379944975.1 AAA family ATPase -

Sequence

Protein


Download         Length: 705 a.a.        Molecular weight: 75910.69 Da        Isoelectric Point: 4.4149

>NTDB_id=765695 OZ656_RS03925 WP_379944972.1 842882..844999(+) (pilQ) [Marinobacter sp. LM1]
MIERNMHEQKVVGSRLAMFKKLNVCVGVIAIGLWSSLAGAVTLEDVSFTSLPGEGLEVTMKFDGAPPEPKGYTIERPARI
AVDLSDTTSGLNQRSIPLGSGNAQSLTVVETKDRTRLIFNLVELVPHETVRNNNSLVMTIGGGGSAPVASSRPAQPQSAP
VASTSSSNALADVDFRRGKDGEGRVIVDLGSTKAAVNLTELGGRIRLTMPDLEVPANLRRRLDVSDFATPVTRIDTFVED
GNAVIEIRPEGEYDYIAYQSGREFTVSVEELSQEEAEIRREEKFPYTGEKLSLNFQDIEVRSVLQLIADFTGLNLVASDT
VGGSITLRLQNVPWDQALDLILKTKGLDKRQIGNVLLVAPAEEIAAREKLELETNKQIAELAPVRLDIIQVNYAKAADVV
ALIQADEELISSRGFVSSDARTNTISVRETAEKLEEIRRLVSTWDVPVRQVSIEARIVRAQTNVAEDLGVRWGGAAYNVD
GDDVVTIGGSLGTLQEARDAAGGGSNTISFPGALGVDLGVSGEGASSFAIGWGSDDFLVDLELSALESDGRAEVVSQPRV
VTADRQTASIKSGEEIPYQKAASSGATSVSFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVMTQV
LVANGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRLFKRTEHINERSELLIFITPKIIKNDLID

Nucleotide


Download         Length: 2118 bp        

>NTDB_id=765695 OZ656_RS03925 WP_379944972.1 842882..844999(+) (pilQ) [Marinobacter sp. LM1]
ATGATTGAAAGAAATATGCATGAACAAAAAGTTGTGGGATCGAGGCTAGCGATGTTCAAAAAACTCAATGTCTGTGTCGG
CGTGATTGCCATCGGGTTATGGAGTAGCCTGGCCGGAGCGGTCACGCTGGAAGACGTATCGTTTACGTCGCTGCCGGGGG
AAGGCCTCGAAGTGACCATGAAGTTCGATGGTGCCCCGCCCGAACCTAAGGGTTATACCATCGAGCGTCCTGCACGGATC
GCCGTAGACCTGTCGGATACCACCAGCGGCCTCAATCAGCGCAGCATTCCGCTGGGTAGCGGAAATGCCCAGAGCCTGAC
GGTCGTGGAAACCAAGGACCGCACCCGGTTGATCTTCAATCTGGTGGAGCTGGTGCCTCATGAAACGGTTCGCAACAATA
ACTCGCTGGTAATGACCATTGGTGGAGGCGGTTCAGCGCCTGTGGCGAGCTCCCGCCCGGCACAGCCCCAGTCAGCGCCA
GTTGCCTCAACCTCATCTTCCAATGCGCTGGCGGATGTGGATTTCCGCCGGGGCAAAGACGGTGAAGGTCGGGTGATTGT
GGATCTCGGCAGCACCAAGGCCGCTGTAAACCTCACTGAGCTTGGTGGCCGTATCCGGCTGACCATGCCGGACCTGGAGG
TGCCGGCCAACCTGCGCCGTCGCCTGGATGTTTCGGACTTCGCCACTCCGGTAACCCGTATCGATACATTTGTTGAAGAT
GGCAATGCGGTGATCGAAATCCGTCCGGAAGGCGAGTACGACTACATTGCCTACCAGTCTGGCCGGGAGTTTACGGTCAG
TGTTGAAGAGCTGTCCCAGGAAGAAGCGGAAATCCGCCGTGAAGAGAAGTTCCCGTACACCGGTGAGAAACTGTCCCTGA
ACTTCCAGGATATTGAAGTGCGCTCTGTACTTCAGCTGATTGCCGATTTCACCGGCCTGAACCTGGTGGCCAGTGACACT
GTGGGTGGCAGCATCACTCTGCGTCTGCAGAATGTGCCGTGGGACCAGGCCCTGGACCTGATTCTCAAGACCAAAGGTTT
GGACAAACGCCAGATTGGCAACGTACTGCTGGTTGCGCCGGCTGAAGAAATTGCGGCTCGTGAGAAACTGGAGCTCGAGA
CGAATAAGCAGATCGCTGAGTTGGCACCGGTGCGGCTGGATATTATTCAGGTGAACTACGCCAAGGCGGCGGATGTGGTT
GCTCTGATTCAGGCGGATGAAGAACTGATCTCCTCCCGCGGTTTTGTGTCATCTGATGCCAGAACCAATACCATCAGTGT
TCGGGAAACCGCTGAGAAGCTGGAGGAAATACGCCGGCTGGTATCCACGTGGGATGTCCCGGTTCGCCAAGTGTCAATTG
AAGCTCGCATTGTTCGTGCCCAAACTAACGTGGCGGAAGATCTGGGTGTTCGCTGGGGTGGTGCTGCTTACAATGTCGAT
GGCGATGACGTTGTGACCATTGGTGGCTCGCTGGGCACCCTGCAGGAAGCTCGCGACGCAGCTGGCGGTGGCAGCAATAC
CATTTCCTTCCCGGGTGCCTTGGGTGTTGATCTAGGGGTGTCTGGCGAGGGCGCATCCTCCTTCGCAATCGGCTGGGGCA
GTGATGACTTCCTGGTAGATCTGGAGCTTTCTGCCCTCGAAAGCGACGGCCGTGCAGAAGTGGTCTCCCAGCCGCGGGTT
GTGACTGCGGACCGCCAGACGGCATCTATCAAGTCCGGTGAAGAGATTCCGTACCAGAAAGCTGCGTCCAGTGGTGCCAC
TTCCGTTTCTTTTAAGGAGGCTGTGCTATCGTTGGAAGTGACCCCGCAAATTACCCCGGATGATAAGATCATTATGGATC
TGGTAGTCAACCAGGATTCCCGGGGCGAGGTCACGGCCGGTATTCCGTCGATCAACACCAATGAAGTTATGACTCAAGTG
CTGGTGGCGAACGGCGAGACAGTGGTTCTGGGTGGTATCTTCCAGTCCGAGGTGGCCACGCAAACCACCAAGACTCCGTT
CCTGGGTGATATTCCCTACCTTGGCCGCCTGTTCAAGCGTACTGAGCACATCAATGAGCGCAGTGAGCTGCTGATCTTCA
TCACCCCGAAGATCATCAAGAACGACCTGATCGACTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(388-450)

Bacterial type II and III secretion system protein (Secretin)

(545-700)

Secretin and TonB N terminus short domain (STN)

(314-360)

AMIN domain (AMIN)

(54-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.045

100

0.488
  comQ Acinetobacter baylyi ADP1

41.127

100

0.414
  pilQ Acinetobacter baumannii D1279779

40.083

100

0.413
  pilQ Acinetobacter baumannii strain A118

40.083

100

0.413
  pilQ Legionella pneumophila strain ERS1305867

40.533

95.887

0.389
  pilQ Legionella pneumophila strain Lp02

40.385

95.887

0.387