Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   OZ656_RS03905 Genome accession   NZ_CP114373
Coordinates   840078..841142 (+) Length   354 a.a.
NCBI ID   WP_036149326.1    Uniprot ID   -
Organism   Marinobacter sp. LM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 835078..846142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ656_RS03890 (OZ656_03875) rpmE 835512..835733 (+) 222 WP_014420566.1 50S ribosomal protein L31 -
  OZ656_RS03895 (OZ656_03880) - 835948..837213 (+) 1266 WP_022992075.1 malic enzyme-like NAD(P)-binding protein -
  OZ656_RS03900 (OZ656_03885) - 837300..839840 (-) 2541 WP_379944971.1 penicillin-binding protein 1A -
  OZ656_RS03905 (OZ656_03890) pilM 840078..841142 (+) 1065 WP_036149326.1 pilus assembly protein PilM Machinery gene
  OZ656_RS03910 (OZ656_03895) - 841142..841705 (+) 564 WP_224851271.1 PilN domain-containing protein -
  OZ656_RS03915 (OZ656_03900) - 841705..842316 (+) 612 WP_278350790.1 type 4a pilus biogenesis protein PilO -
  OZ656_RS03920 (OZ656_03905) - 842319..842861 (+) 543 WP_199456780.1 pilus assembly protein PilP -
  OZ656_RS03925 (OZ656_03910) pilQ 842882..844999 (+) 2118 WP_379944972.1 type IV pilus secretin PilQ Machinery gene
  OZ656_RS03930 (OZ656_03915) aroK 845138..845728 (+) 591 WP_379944973.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38021.04 Da        Isoelectric Point: 4.1824

>NTDB_id=765694 OZ656_RS03905 WP_036149326.1 840078..841142(+) (pilM) [Marinobacter sp. LM1]
MFGLPGKKSSAVLGVDVSSSSVKLLELSKHGDRYKVESYAVEPLPANAVVEKNITDVEAVGEVLKRVASKSRTSVKQVAV
AVSGSAVITKVIQMDGGLNEFEMEDQIALEADQYIPYPLDEVAIDFEVQGPSESNPDQVDVLLAACRKENVDIREDALEI
AGLTTRIVDVEAYALERAYSLIEPQLDSQGEELVVAIVDIGATMTTLSVLAEGKTVYTREQIFGGKQLTEEIQRRYGLSL
EEAGLAKKQGGLPDDYNEEVLTPFREAVVQQVARALQFFFGASQYNAVDYVVLAGGTASIQGLTEMVEEKTGTPTLVANP
FANMAVGSRVNASALSNDAPSLMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=765694 OZ656_RS03905 WP_036149326.1 840078..841142(+) (pilM) [Marinobacter sp. LM1]
GTGTTCGGATTACCAGGAAAAAAATCCAGTGCCGTCCTTGGAGTGGATGTAAGCTCCAGTTCGGTCAAGCTGCTAGAGCT
GTCAAAACATGGCGATCGATATAAGGTCGAGAGCTATGCGGTAGAGCCGTTGCCGGCCAATGCAGTGGTTGAAAAAAACA
TCACAGACGTTGAAGCGGTTGGGGAAGTGCTCAAGCGTGTCGCGTCCAAATCACGTACCAGTGTGAAGCAGGTAGCCGTT
GCTGTTTCCGGCTCGGCGGTGATCACCAAGGTTATCCAGATGGATGGTGGTCTTAACGAGTTTGAGATGGAAGACCAGAT
CGCACTGGAAGCGGATCAGTACATTCCTTACCCCCTTGATGAAGTGGCGATCGATTTTGAAGTCCAGGGCCCGTCCGAAT
CCAACCCGGATCAGGTGGATGTGCTGCTGGCAGCCTGCCGTAAGGAAAACGTCGATATCCGAGAAGATGCCCTGGAAATT
GCAGGGCTGACAACCAGGATTGTCGATGTGGAAGCCTACGCTCTGGAGCGCGCTTACAGTCTGATTGAGCCCCAGCTTGA
TTCTCAGGGCGAAGAGTTGGTGGTTGCCATCGTCGATATCGGTGCAACCATGACAACCCTGAGTGTGCTGGCAGAGGGCA
AAACGGTCTATACCCGCGAGCAGATCTTTGGCGGAAAACAGCTGACGGAAGAGATTCAGCGTCGTTACGGGCTTTCGCTT
GAAGAGGCGGGTCTGGCCAAGAAGCAGGGTGGTTTGCCAGACGACTACAACGAGGAAGTCCTGACCCCGTTCCGGGAAGC
GGTTGTTCAGCAAGTGGCGCGGGCGCTGCAGTTTTTCTTCGGCGCGAGTCAGTACAACGCGGTGGATTACGTGGTGCTTG
CCGGAGGAACAGCGTCGATTCAGGGGCTCACGGAAATGGTGGAAGAGAAAACTGGAACGCCAACCCTGGTGGCCAATCCG
TTTGCCAATATGGCGGTGGGCTCCCGGGTTAACGCCTCTGCGCTAAGCAATGATGCCCCCTCGTTGATGATTGCCTGCGG
TCTGGCAATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

53.39

100

0.534
  comM Acinetobacter nosocomialis M2

53.39

100

0.534
  comM Acinetobacter baylyi ADP1

51.412

100

0.514
  pilM Legionella pneumophila strain ERS1305867

44.915

100

0.449