Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   O0R52_RS17920 Genome accession   NZ_CP114066
Coordinates   3507213..3507809 (+) Length   198 a.a.
NCBI ID   WP_044159265.1    Uniprot ID   -
Organism   Bacillus halotolerans strain B13     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3502213..3512809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS17890 (O0R52_17890) aspP 3503177..3504739 (+) 1563 WP_044159259.1 aspartate/proton symporter AspP -
  O0R52_RS17895 (O0R52_17895) - 3504835..3505419 (+) 585 WP_256766412.1 TetR family transcriptional regulator -
  O0R52_RS17900 (O0R52_17900) - 3505497..3505832 (+) 336 WP_044160350.1 DMT family transporter -
  O0R52_RS17905 (O0R52_17905) - 3505832..3506146 (+) 315 WP_024122952.1 DMT family transporter -
  O0R52_RS17910 (O0R52_17910) - 3506192..3506707 (-) 516 WP_024122953.1 DUF3231 family protein -
  O0R52_RS17920 (O0R52_17920) clpP 3507213..3507809 (+) 597 WP_044159265.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  O0R52_RS17925 (O0R52_17925) pgmB 3507927..3508607 (-) 681 WP_269107420.1 beta-phosphoglucomutase -
  O0R52_RS17930 (O0R52_17930) - 3508604..3510289 (-) 1686 WP_256766414.1 glycoside hydrolase family 13 protein -
  O0R52_RS17935 (O0R52_17935) - 3510282..3512555 (-) 2274 WP_256766415.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21845.09 Da        Isoelectric Point: 4.7048

>NTDB_id=764414 O0R52_RS17920 WP_044159265.1 3507213..3507809(+) (clpP) [Bacillus halotolerans strain B13]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNSEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=764414 O0R52_RS17920 WP_044159265.1 3507213..3507809(+) (clpP) [Bacillus halotolerans strain B13]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTTTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCGG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCTTGCTTGCTGCCGG
AGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGAGCTCAAGGTCAAGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTGCTTGCTGAACGTACTGGCCAG
CCTCTTGAAGTGATCGAACGCGACACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATTCTGACTCGCAACTCAGAAGATCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

96.465

100

0.965
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Streptococcus pneumoniae D39

58.247

97.98

0.571
  clpP Streptococcus pneumoniae Rx1

58.247

97.98

0.571
  clpP Streptococcus pneumoniae R6

58.247

97.98

0.571
  clpP Streptococcus pneumoniae TIGR4

58.247

97.98

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

57.732

97.98

0.566
  clpP Streptococcus pyogenes JRS4

56.477

97.475

0.551
  clpP Streptococcus pyogenes MGAS315

56.477

97.475

0.551
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.67

97.98

0.545
  clpP Streptococcus mutans UA159

55.155

97.98

0.54