Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QMY43_RS01485 Genome accession   NZ_CP125856
Coordinates   294931..295389 (-) Length   152 a.a.
NCBI ID   WP_029847971.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain G855     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 289931..300389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY43_RS01465 (QMY43_01465) coaE 290452..291066 (-) 615 WP_031847490.1 dephospho-CoA kinase -
  QMY43_RS01470 (QMY43_01470) pilD 291067..291936 (-) 870 WP_015297252.1 A24 family peptidase Machinery gene
  QMY43_RS01475 (QMY43_01475) pilC 292001..293224 (-) 1224 WP_140103791.1 type II secretion system F family protein Machinery gene
  QMY43_RS01480 (QMY43_01480) pilB 293249..294934 (-) 1686 WP_140103792.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMY43_RS01485 (QMY43_01485) pilA 294931..295389 (-) 459 WP_029847971.1 pilin Machinery gene
  QMY43_RS01490 (QMY43_01490) nadC 295655..296542 (-) 888 WP_140103793.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QMY43_RS01495 (QMY43_01495) ampD 296635..297186 (+) 552 WP_005462574.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QMY43_RS01500 (QMY43_01500) pdhR 297592..298359 (+) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16193.62 Da        Isoelectric Point: 9.0377

>NTDB_id=764245 QMY43_RS01485 WP_029847971.1 294931..295389(-) (pilA) [Vibrio parahaemolyticus strain G855]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAMPQYQKYVAKSEVASVLATLTGAKTNVEAYTVENGLFPNNVSDASPTAL
GVPDMPLGSVVFKRDDNTDGGTIEFTFTSVTSGASSLVATKNLTLTRTKEKGSWACSSTNLENELLPKTCKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=764245 QMY43_RS01485 WP_029847971.1 294931..295389(-) (pilA) [Vibrio parahaemolyticus strain G855]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACGCTGATTGAATTAATGATTGTGGTGGCAGTGATTGGTGTCTT
GGCGGCGATTGCAATGCCACAGTACCAAAAATACGTTGCCAAAAGCGAAGTAGCATCTGTTTTAGCCACACTTACTGGTG
CAAAAACTAACGTAGAAGCATACACAGTAGAAAACGGCTTATTTCCAAACAATGTCTCTGACGCATCACCGACGGCTTTG
GGTGTACCAGACATGCCGCTGGGAAGTGTAGTGTTTAAAAGGGATGATAATACTGATGGTGGTACAATAGAATTTACTTT
TACCTCAGTAACTAGCGGAGCAAGCTCCTTAGTAGCGACCAAAAATTTAACACTCACTAGAACAAAAGAAAAAGGGTCTT
GGGCTTGTTCATCTACCAACCTAGAAAATGAACTTCTCCCAAAAACCTGCAAAAAATGA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(40-151)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio cholerae strain A1552

46.753

100

0.474
  pilA Vibrio cholerae C6706

46.753

100

0.474
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

46.753

100

0.474
  pilA Pseudomonas aeruginosa PAK

42.763

100

0.428
  pilA Acinetobacter baumannii strain A118

42.657

94.079

0.401
  pilA Vibrio parahaemolyticus RIMD 2210633

46.721

80.263

0.375
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.356

96.053

0.368