Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIY87_RS09265 Genome accession   NZ_CP113954
Coordinates   1852117..1852707 (-) Length   196 a.a.
NCBI ID   WP_003066032.1    Uniprot ID   A0AAW6YFC2
Organism   Streptococcus gallolyticus strain XH2168     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1845017..1854714 1852117..1852707 within 0


Gene organization within MGE regions


Location: 1845017..1854714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS09220 (OIY87_10535) tmk 1845017..1845652 (-) 636 WP_012962375.1 dTMP kinase -
  OIY87_RS09225 (OIY87_10540) - 1845839..1846498 (-) 660 WP_012962376.1 CBS domain-containing protein -
  OIY87_RS09230 (OIY87_10545) - 1846672..1847382 (-) 711 WP_009854757.1 ABC transporter ATP-binding protein -
  OIY87_RS09235 (OIY87_10550) - 1847382..1848146 (-) 765 WP_012962378.1 ABC transporter ATP-binding protein -
  OIY87_RS09240 (OIY87_10555) - 1848146..1849099 (-) 954 WP_009854758.1 branched-chain amino acid ABC transporter permease -
  OIY87_RS09245 (OIY87_10560) - 1849103..1849987 (-) 885 WP_009854759.1 branched-chain amino acid ABC transporter permease -
  OIY87_RS09250 (OIY87_10565) - 1850039..1851220 (-) 1182 WP_009854760.1 ABC transporter substrate-binding protein -
  OIY87_RS09255 (OIY87_10570) - 1851333..1851584 (-) 252 WP_247945918.1 YlbG family protein -
  OIY87_RS09260 (OIY87_10575) - 1851577..1852020 (-) 444 WP_247945917.1 YlbF family regulator -
  OIY87_RS09265 (OIY87_10580) clpP 1852117..1852707 (-) 591 WP_003066032.1 ATP-dependent Clp protease proteolytic subunit ClpP Regulator
  OIY87_RS09270 (OIY87_10585) - 1852839..1853732 (-) 894 WP_269724920.1 DMT family transporter -
  OIY87_RS09275 (OIY87_10590) - 1853845..1854714 (+) 870 WP_012962379.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21494.45 Da        Isoelectric Point: 4.3383

>NTDB_id=763839 OIY87_RS09265 WP_003066032.1 1852117..1852707(-) (clpP) [Streptococcus gallolyticus strain XH2168]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRQNLEQILADNSGQ
TLEKVHADAERDNWMSAQETLEYGFIDEIMVNNELN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=763839 OIY87_RS09265 WP_003066032.1 1852117..1852707(-) (clpP) [Streptococcus gallolyticus strain XH2168]
ATGATTCCTGTAGTTATTGAACAAACGAGCCGTGGCGAACGCTCATACGATATTTATTCACGCCTTTTGAAAGACCGTAT
TATCATGTTGACTGGACCAGTTGAAGATAATATGGCTAACTCTATCATTGCCCAATTGTTGTTCCTTGATGCACAAGATA
ACACTAAAGATATTTACCTTTATGTTAATACTCCTGGTGGTTCAGTATCAGCAGGACTTGCCATTGTTGATACAATGAAT
TTCATTAAATCAGATGTTCAAACAATTGTTATGGGTATGGCAGCTTCAATGGGAACTGTTATTGCGTCATCAGGTGCAAA
AGGTAAACGTTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACTGGTGGCGGTACACAACAAA
CAGATATGGCAATTGCTGCCGAACACCTTTTGAAAACACGTCAAAACTTGGAACAAATTTTGGCTGACAACTCTGGTCAA
ACATTGGAAAAAGTTCACGCTGACGCCGAACGTGATAACTGGATGAGCGCACAAGAAACCCTCGAATACGGCTTCATCGA
CGAAATCATGGTAAACAACGAATTAAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

95.385

99.49

0.949
  clpP Streptococcus thermophilus LMD-9

95.385

99.49

0.949
  clpP Streptococcus pneumoniae Rx1

94.388

100

0.944
  clpP Streptococcus pneumoniae D39

94.388

100

0.944
  clpP Streptococcus pneumoniae R6

94.388

100

0.944
  clpP Streptococcus pneumoniae TIGR4

94.388

100

0.944
  clpP Streptococcus pyogenes JRS4

90.306

100

0.903
  clpP Streptococcus pyogenes MGAS315

90.306

100

0.903
  clpP Streptococcus mutans UA159

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

86.735

100

0.867
  clpP Lactococcus lactis subsp. cremoris KW2

86.224

100

0.862
  clpP Bacillus subtilis subsp. subtilis str. 168

58.763

98.98

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.474

96.939

0.577