Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QMZ10_RS07405 Genome accession   NZ_CP125739
Coordinates   1416311..1416694 (-) Length   127 a.a.
NCBI ID   WP_042635825.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1411311..1421694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ10_RS07380 (QMZ10_07385) aspS 1411876..1413627 (+) 1752 WP_002870092.1 aspartate--tRNA ligase -
  QMZ10_RS07385 (QMZ10_07390) adk 1413624..1414202 (+) 579 WP_002855137.1 adenylate kinase -
  QMZ10_RS07390 (QMZ10_07395) ppa 1414212..1414730 (+) 519 WP_002870091.1 inorganic diphosphatase -
  QMZ10_RS07395 (QMZ10_07400) msrA 1414771..1415268 (+) 498 WP_042635826.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMZ10_RS07400 (QMZ10_07405) - 1415443..1416282 (-) 840 WP_079264558.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMZ10_RS07405 (QMZ10_07410) dprB 1416311..1416694 (-) 384 WP_042635825.1 Holliday junction resolvase RuvX Machinery gene
  QMZ10_RS07410 (QMZ10_07415) dprA 1416691..1417464 (-) 774 WP_002870087.1 DNA-processing protein DprA Machinery gene
  QMZ10_RS07415 (QMZ10_07420) - 1417454..1418536 (-) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  QMZ10_RS07420 (QMZ10_07425) ilvC 1418540..1419562 (-) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  QMZ10_RS07425 (QMZ10_07430) - 1419681..1421615 (+) 1935 WP_002870085.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14174.69 Da        Isoelectric Point: 9.0848

>NTDB_id=763765 QMZ10_RS07405 WP_042635825.1 1416311..1416694(-) (dprB) [Campylobacter jejuni strain MS2202]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=763765 QMZ10_RS07405 WP_042635825.1 1416311..1416694(-) (dprB) [Campylobacter jejuni strain MS2202]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGTATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGACTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

45.669

100

0.457