Detailed information NTG0763767

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OYW20_RS22360
• Genome accession: NZ_CP113949
• Coordinates: 4958882..4959754 (+)
• Length: 290 a.a.
• NCBI ID: WP_268798072.1
• Uniprot ID: -
• Organism: Pseudomonas huanghezhanensis strain BSw22131
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4953882..4964754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OYW20_RS22335	nadC	4954078..4954926 (+)	849	WP_268798068.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OYW20_RS22345	-	4955304..4955738 (-)	435	WP_268798069.1	pilin	-
OYW20_RS22350	pilB	4955964..4957658 (+)	1695	WP_268798070.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OYW20_RS22355	pilC	4957661..4958878 (+)	1218	WP_268798071.1	type II secretion system F family protein	Machinery gene
OYW20_RS22360	pilD	4958882..4959754 (+)	873	WP_268798072.1	A24 family peptidase	Machinery gene
OYW20_RS22365	coaE	4959751..4960374 (+)	624	WP_268798073.1	dephospho-CoA kinase	-
OYW20_RS22370	yacG	4960371..4960574 (+)	204	WP_268798074.1	DNA gyrase inhibitor YacG	-
OYW20_RS22375	-	4960628..4961089 (-)	462	WP_268798075.1	hypothetical protein	-
OYW20_RS22380	-	4961233..4961862 (+)	630	WP_268798076.1	DUF1780 domain-containing protein	-
OYW20_RS22385	-	4961859..4962398 (+)	540	WP_268798077.1	MOSC domain-containing protein	-
OYW20_RS22390	-	4962440..4962553 (+)	114	WP_408005529.1	hypothetical protein	-
OYW20_RS22395	-	4962679..4963977 (+)	1299	WP_268798078.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31975.29 Da
• Isoelectric Point: 7.6415

>NTDB_id=763767 OYW20_RS22360 WP_268798072.1 4958882..4959754(+) (pilD) [Pseudomonas huanghezhanensis strain BSw22131]
MSLLDLLASSPLAFILCTLVLGLLVGSFLNVVVYRLPIMMIRDWKTQAREMLELPAEPTTPTFNLILPHSRCPHCSHQIR
AWENLPVISYLFLGGKCSSCKAPISKRYPLVELTCGLLSAFIAWHFGFGWQAGAMLVLSWGLLAMSLIDADHQLLPDSIV
LPLLWLGLIVNTFGLFTSLTDALWGAVAGYLVLWLVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGLIMLRLRNVETSTPIPFGPYLAIAGWIALLWGDQITASYLQIAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=763767 OYW20_RS22360 WP_268798072.1 4958882..4959754(+) (pilD) [Pseudomonas huanghezhanensis strain BSw22131]
ATGTCCCTCCTCGATCTCCTGGCCAGCTCTCCCCTGGCCTTTATCCTGTGCACGCTTGTTTTAGGCCTGCTGGTTGGCAG
CTTTCTCAACGTGGTCGTTTACCGCTTGCCGATCATGATGATCCGCGACTGGAAAACCCAGGCGCGCGAGATGCTCGAGT
TGCCAGCAGAGCCAACGACGCCAACGTTCAATCTGATCCTCCCGCACTCACGCTGCCCGCATTGTTCACACCAGATCCGT
GCGTGGGAAAACCTGCCGGTCATCAGCTACCTGTTTCTGGGCGGCAAATGCTCAAGCTGCAAAGCGCCGATCAGCAAGCG
TTATCCGCTGGTGGAGCTGACCTGCGGATTGCTGTCGGCGTTTATCGCCTGGCATTTCGGGTTTGGATGGCAGGCCGGGG
CGATGCTGGTCTTGAGTTGGGGGTTGTTAGCGATGAGCCTGATCGACGCCGATCACCAACTGCTGCCCGATTCAATCGTT
CTACCCCTGCTGTGGCTGGGCCTGATCGTCAATACGTTTGGCCTGTTCACCTCGCTGACCGACGCACTCTGGGGCGCGGT
GGCCGGGTATCTGGTGCTGTGGCTGGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAAGAAGGCATGGGTTATGGGGATT
TCAAGCTGCTGGCCATGCTCGGCGCATGGGGTGGATGGCAGATATTGCCGCTGACGATTCTACTGTCGTCGCTGGTGGGC
GCGGTTTTGGGCTTGATCATGCTGCGCTTGCGCAACGTCGAAACCAGCACGCCAATCCCGTTTGGTCCTTATCTGGCCAT
CGCGGGGTGGATCGCTTTGCTCTGGGGTGATCAAATAACCGCTTCGTATCTGCAAATTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.357	97.586	0.521
pilD	Vibrio campbellii strain DS40M4	51.59	97.586	0.503
pilD	Acinetobacter baumannii D1279779	52.92	94.483	0.5
pilD	Acinetobacter nosocomialis M2	52.555	94.483	0.497
pilD	Neisseria gonorrhoeae MS11	50.725	95.172	0.483