Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OYW20_RS22355 Genome accession   NZ_CP113949
Coordinates   4957661..4958878 (+) Length   405 a.a.
NCBI ID   WP_268798071.1    Uniprot ID   -
Organism   Pseudomonas huanghezhanensis strain BSw22131     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4952661..4963878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYW20_RS22335 nadC 4954078..4954926 (+) 849 WP_268798068.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OYW20_RS22345 - 4955304..4955738 (-) 435 WP_268798069.1 pilin -
  OYW20_RS22350 pilB 4955964..4957658 (+) 1695 WP_268798070.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OYW20_RS22355 pilC 4957661..4958878 (+) 1218 WP_268798071.1 type II secretion system F family protein Machinery gene
  OYW20_RS22360 pilD 4958882..4959754 (+) 873 WP_268798072.1 A24 family peptidase Machinery gene
  OYW20_RS22365 coaE 4959751..4960374 (+) 624 WP_268798073.1 dephospho-CoA kinase -
  OYW20_RS22370 yacG 4960371..4960574 (+) 204 WP_268798074.1 DNA gyrase inhibitor YacG -
  OYW20_RS22375 - 4960628..4961089 (-) 462 WP_268798075.1 hypothetical protein -
  OYW20_RS22380 - 4961233..4961862 (+) 630 WP_268798076.1 DUF1780 domain-containing protein -
  OYW20_RS22385 - 4961859..4962398 (+) 540 WP_268798077.1 MOSC domain-containing protein -
  OYW20_RS22390 - 4962440..4962553 (+) 114 WP_408005529.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44230.01 Da        Isoelectric Point: 10.0589

>NTDB_id=763766 OYW20_RS22355 WP_268798071.1 4957661..4958878(+) (pilC) [Pseudomonas huanghezhanensis strain BSw22131]
MATKAVKVSAFTWEGLDKKGTKVTGEINGHNPALVKAQLRKQGINPTKVRKKSVSIFSKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIIEGTDNPNMRTLVDDVKQQVASGHSFATALRQKPQYFDDLFCNLVDAGEQAGALEALLDRVATYKEKT
ESLKAKIKKAMTYPIAVVVVAFIVTGILLIKVVPQFQSVFAGFGAKLPAFTLMVIGLSEAVQEYWYMFLGAMFLAFWSFK
RAHKTSEKFRNGVDRALLKFPIIGPLLYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGM
QLNFSMRSTGVFPMLAVQMTAIGEESGALDNMLDKVATYYEDEVDNLVDSLTSLMEPMIMAFLGVVVGGLVIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=763766 OYW20_RS22355 WP_268798071.1 4957661..4958878(+) (pilC) [Pseudomonas huanghezhanensis strain BSw22131]
ATGGCGACCAAAGCAGTAAAAGTCAGCGCCTTTACCTGGGAAGGTCTGGACAAGAAGGGCACGAAAGTCACAGGTGAAAT
CAACGGCCACAACCCGGCCCTGGTCAAGGCGCAGCTGCGCAAACAAGGTATCAACCCCACAAAAGTCCGCAAAAAGTCCG
TTTCGATCTTCAGCAAAGGCAAGAAAATCAAGCCGCTGGACATCGCTTTTTTCAGCCGCCAGATGGCAACCATGATGAAG
GCGGGCGTACCGCTGTTGCAGTCGTTCGACATCATCATTGAGGGCACAGACAACCCGAACATGCGCACACTGGTTGATGA
CGTAAAACAGCAAGTCGCATCCGGCCACAGCTTTGCCACGGCGCTACGTCAGAAGCCTCAATATTTTGATGACCTGTTCT
GCAACCTGGTGGACGCAGGCGAGCAAGCCGGTGCGCTGGAAGCGCTGCTCGACAGGGTTGCGACTTACAAGGAAAAAACC
GAGTCGTTGAAAGCAAAAATCAAAAAAGCCATGACGTATCCGATTGCGGTTGTCGTGGTCGCCTTCATCGTGACCGGCAT
TTTGCTGATTAAAGTGGTGCCGCAGTTTCAATCGGTGTTTGCAGGCTTCGGCGCCAAACTTCCAGCATTTACGCTGATGG
TGATTGGCTTGTCGGAAGCCGTACAGGAGTATTGGTACATGTTTTTGGGCGCGATGTTTCTCGCCTTTTGGTCGTTCAAA
CGGGCACACAAAACATCCGAAAAGTTTCGCAACGGTGTAGATCGTGCGCTTCTCAAGTTTCCCATCATCGGCCCTTTGCT
CTACAAGTCTGCGGTCGCCCGTTACGCCCGCACGCTGTCGACCACCTTCGCTGCGGGTGTCCCGTTAGTTGAAGCGCTTG
ATTCGGTAGCAGGCGCAACCGGTAACGTCGTCTTTAAAAACGCGGTCAACAAGGTCAAGCAAGACGTCTCAACCGGCATG
CAACTCAACTTCTCCATGCGCAGCACCGGTGTTTTCCCGATGCTGGCCGTGCAAATGACGGCTATCGGCGAAGAGTCCGG
CGCACTGGACAATATGCTCGACAAGGTCGCGACCTATTACGAGGACGAAGTCGATAACCTGGTCGACAGCCTTACAAGCC
TGATGGAGCCGATGATCATGGCCTTCCTCGGCGTTGTCGTCGGCGGCCTCGTCATCGCCATGTACCTCCCCATCTTCCAA
CTCGGAAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

77.284

100

0.773
  pilC Acinetobacter baumannii D1279779

59.406

99.753

0.593
  pilC Acinetobacter baylyi ADP1

58.578

100

0.59
  pilC Legionella pneumophila strain ERS1305867

54.798

97.778

0.536
  pilG Neisseria gonorrhoeae MS11

43.532

99.259

0.432
  pilG Neisseria meningitidis 44/76-A

43.532

99.259

0.432
  pilC Vibrio campbellii strain DS40M4

42.015

100

0.422
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Thermus thermophilus HB27

38

98.765

0.375