Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   QL281_RS16725 Genome accession   NZ_CP125292
Coordinates   3139365..3140081 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain SRCM117797     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3134365..3145081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS16695 (QL281_16695) - 3134390..3134527 (+) 138 WP_072557053.1 hypothetical protein -
  QL281_RS16700 (QL281_16700) yflB 3134546..3134938 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  QL281_RS16705 (QL281_16705) - 3135063..3135299 (+) 237 Protein_3244 sodium:alanine symporter family protein -
  QL281_RS16710 (QL281_16710) - 3135248..3135982 (-) 735 Protein_3245 spore germination protein -
  QL281_RS16715 (QL281_16715) treP 3136176..3137588 (+) 1413 WP_041338242.1 PTS system trehalose-specific EIIBC component -
  QL281_RS16720 (QL281_16720) treC 3137659..3139344 (+) 1686 WP_041332863.1 alpha,alpha-phosphotrehalase -
  QL281_RS16725 (QL281_16725) treR 3139365..3140081 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  QL281_RS16730 (QL281_16730) hypO 3140221..3140886 (+) 666 WP_041055571.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=762297 QL281_RS16725 WP_003233679.1 3139365..3140081(+) (treR) [Bacillus subtilis strain SRCM117797]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=762297 QL281_RS16725 WP_003233679.1 3139365..3140081(+) (treR) [Bacillus subtilis strain SRCM117797]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCAGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416