Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OUY06_RS09180 Genome accession   NZ_CP113247
Coordinates   1815185..1815745 (-) Length   186 a.a.
NCBI ID   WP_016265666.1    Uniprot ID   A0A9N7J0X6
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810185..1820745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS09150 rplA 1811472..1812161 (-) 690 WP_016265663.1 50S ribosomal protein L1 -
  OUY06_RS09155 rplK 1812260..1812685 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  OUY06_RS09160 - 1812811..1813668 (-) 858 WP_016265664.1 alpha/beta fold hydrolase -
  OUY06_RS09165 nusG 1814075..1814623 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  OUY06_RS09170 secE 1814721..1814894 (-) 174 WP_016265665.1 preprotein translocase subunit SecE -
  OUY06_RS09175 rpmG 1814910..1815059 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  OUY06_RS09180 sigH 1815185..1815745 (-) 561 WP_016265666.1 sigma-70 family RNA polymerase sigma factor Regulator
  OUY06_RS09185 - 1815823..1816356 (-) 534 WP_016265667.1 NYN domain-containing protein -
  OUY06_RS09190 rlmB 1816360..1817247 (-) 888 WP_011375369.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OUY06_RS09195 - 1817234..1817641 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  OUY06_RS09200 cysS 1817638..1819044 (-) 1407 WP_278319792.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22072.18 Da        Isoelectric Point: 6.6722

>NTDB_id=761190 OUY06_RS09180 WP_016265666.1 1815185..1815745(-) (sigH) [Latilactobacillus sakei strain CNSC001WB]
MEQTKRDELLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=761190 OUY06_RS09180 WP_016265666.1 1815185..1815745(-) (sigH) [Latilactobacillus sakei strain CNSC001WB]
ATGGAACAAACAAAGCGCGACGAACTGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGAGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGACCAGTTGAAACGAGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

97.849

100

0.978