Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   OUY06_RS09635 Genome accession   NZ_CP113247
Coordinates   1897261..1897950 (+) Length   229 a.a.
NCBI ID   WP_076645336.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892261..1902950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS09615 - 1892703..1893254 (+) 552 WP_061827366.1 isochorismatase family cysteine hydrolase -
  OUY06_RS09620 fusA 1893824..1895911 (-) 2088 WP_016265721.1 elongation factor G -
  OUY06_RS09625 rpsG 1896007..1896477 (-) 471 WP_004270185.1 30S ribosomal protein S7 -
  OUY06_RS09630 rpsL 1896567..1896980 (-) 414 WP_004270179.1 30S ribosomal protein S12 -
  OUY06_RS09635 comC 1897261..1897950 (+) 690 WP_076645336.1 A24 family peptidase Machinery gene
  OUY06_RS09640 - 1897954..1898526 (-) 573 WP_061827365.1 isochorismatase family protein -
  OUY06_RS09645 rpoC 1898700..1902344 (-) 3645 WP_035147345.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26190.50 Da        Isoelectric Point: 7.2085

>NTDB_id=761192 OUY06_RS09635 WP_076645336.1 1897261..1897950(+) (comC) [Latilactobacillus sakei strain CNSC001WB]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=761192 OUY06_RS09635 WP_076645336.1 1897261..1897950(+) (comC) [Latilactobacillus sakei strain CNSC001WB]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-89)

Type IV leader peptidase family (Peptidase_A24)

(99-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

97.38

100

0.974