Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OSZ57_RS00375 Genome accession   NZ_CP113231
Coordinates   77153..77548 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BIAI 158     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 72153..82548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSZ57_RS00350 (OSZ57_00350) - 73379..73783 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  OSZ57_RS00355 (OSZ57_00355) - 74380..74613 (+) 234 WP_000384523.1 DUF1146 family protein -
  OSZ57_RS00360 (OSZ57_00360) murA 74724..75989 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OSZ57_RS00365 (OSZ57_00365) fabZ 76023..76463 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OSZ57_RS00370 (OSZ57_00370) - 76519..76959 (-) 441 WP_000846751.1 YwpF-like family protein -
  OSZ57_RS00375 (OSZ57_00375) ssb 77153..77548 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OSZ57_RS00380 (OSZ57_00380) sceD 77937..78632 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  OSZ57_RS00385 (OSZ57_00385) tenA 79020..79709 (+) 690 WP_064135595.1 thiaminase II -
  OSZ57_RS00390 (OSZ57_00390) thiD 79702..80532 (+) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OSZ57_RS00395 (OSZ57_00395) thiM 80516..81307 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  OSZ57_RS00400 (OSZ57_00400) thiE 81309..81950 (+) 642 WP_000483162.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=760985 OSZ57_RS00375 WP_000932694.1 77153..77548(+) (ssb) [Staphylococcus aureus strain BIAI 158]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=760985 OSZ57_RS00375 WP_000932694.1 77153..77548(+) (ssb) [Staphylococcus aureus strain BIAI 158]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992