Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OSH13_RS16010 Genome accession   NZ_CP113070
Coordinates   3412366..3412839 (-) Length   157 a.a.
NCBI ID   WP_168726697.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3407366..3417839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH13_RS15995 (OSH13_15995) pilX 3409995..3410813 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSH13_RS16000 (OSH13_16000) pilW 3410810..3411811 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSH13_RS16005 (OSH13_16005) pilV 3411812..3412372 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSH13_RS16010 (OSH13_16010) fimU 3412366..3412839 (-) 474 WP_168726697.1 GspH/FimT family pseudopilin Machinery gene
  OSH13_RS16015 (OSH13_16015) ispH 3413009..3413959 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSH13_RS16020 (OSH13_16020) gmk 3414082..3414711 (+) 630 WP_000015937.1 guanylate kinase -
  OSH13_RS16025 (OSH13_16025) rpoZ 3414784..3415062 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSH13_RS16030 (OSH13_16030) - 3415101..3415230 (+) 130 Protein_3117 hypothetical protein -
  OSH13_RS16035 (OSH13_16035) - 3415270..3417375 (+) 2106 WP_168726696.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16809.38 Da        Isoelectric Point: 8.5355

>NTDB_id=759740 OSH13_RS16010 WP_168726697.1 3412366..3412839(-) (fimU) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKAIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=759740 OSH13_RS16010 WP_168726697.1 3412366..3412839(-) (fimU) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACG
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGCCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-145)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994