Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OSH13_RS15995 Genome accession   NZ_CP113070
Coordinates   3409995..3410813 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404995..3415813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH13_RS15980 (OSH13_15980) pilE 3405212..3405637 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OSH13_RS15985 (OSH13_15985) pilY2 3405634..3406116 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OSH13_RS15990 (OSH13_15990) pilY1 3406129..3409983 (-) 3855 WP_171945433.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH13_RS15995 (OSH13_15995) pilX 3409995..3410813 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSH13_RS16000 (OSH13_16000) pilW 3410810..3411811 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSH13_RS16005 (OSH13_16005) pilV 3411812..3412372 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSH13_RS16010 (OSH13_16010) fimU 3412366..3412839 (-) 474 WP_168726697.1 GspH/FimT family pseudopilin Machinery gene
  OSH13_RS16015 (OSH13_16015) ispH 3413009..3413959 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSH13_RS16020 (OSH13_16020) gmk 3414082..3414711 (+) 630 WP_000015937.1 guanylate kinase -
  OSH13_RS16025 (OSH13_16025) rpoZ 3414784..3415062 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSH13_RS16030 (OSH13_16030) - 3415101..3415230 (+) 130 Protein_3117 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=759737 OSH13_RS15995 WP_000149374.1 3409995..3410813(-) (pilX) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=759737 OSH13_RS15995 WP_000149374.1 3409995..3410813(-) (pilX) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993