Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OSV61_RS01935 Genome accession   NZ_CP113069
Coordinates   409624..410259 (-) Length   211 a.a.
NCBI ID   WP_065718995.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 29D2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404624..415259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV61_RS01900 (OSV61_01900) mlaE 404960..405736 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  OSV61_RS01905 (OSV61_01905) - 405736..406416 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OSV61_RS01910 (OSV61_01910) - 406443..407084 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  OSV61_RS01915 (OSV61_01915) - 407096..407383 (+) 288 WP_000250997.1 STAS domain-containing protein -
  OSV61_RS01920 (OSV61_01920) - 407453..408466 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  OSV61_RS01925 (OSV61_01925) - 408624..409205 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  OSV61_RS01930 (OSV61_01930) - 409220..409621 (+) 402 WP_000849702.1 NUDIX domain-containing protein -
  OSV61_RS01935 (OSV61_01935) comF 409624..410259 (-) 636 WP_065718995.1 phosphoribosyltransferase family protein Machinery gene
  OSV61_RS01940 (OSV61_01940) recG 410252..412297 (-) 2046 WP_065718994.1 ATP-dependent DNA helicase RecG -
  OSV61_RS01945 (OSV61_01945) - 412318..413133 (+) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  OSV61_RS01950 (OSV61_01950) adeT2 413213..414199 (+) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24560.68 Da        Isoelectric Point: 9.7140

>NTDB_id=759664 OSV61_RS01935 WP_065718995.1 409624..410259(-) (comF) [Acinetobacter baumannii strain 29D2]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLVSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=759664 OSV61_RS01935 WP_065718995.1 409624..410259(-) (comF) [Acinetobacter baumannii strain 29D2]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTGTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981