Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BBP27_RS06680 Genome accession   NZ_CP110721
Coordinates   1397912..1399408 (+) Length   498 a.a.
NCBI ID   WP_188211525.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1392912..1404408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS06665 - 1395025..1395906 (-) 882 WP_003745542.1 lysophospholipid acyltransferase family protein -
  BBP27_RS06670 metK 1396299..1397468 (+) 1170 WP_188211524.1 methionine adenosyltransferase -
  BBP27_RS06675 - 1397578..1397898 (+) 321 WP_070849164.1 accessory factor UbiK family protein -
  BBP27_RS06680 comM 1397912..1399408 (+) 1497 WP_188211525.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BBP27_RS06685 - 1399563..1400642 (+) 1080 WP_188211526.1 SPOR domain-containing protein -
  BBP27_RS06690 dsbA1 1400654..1401295 (+) 642 WP_188211527.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  BBP27_RS06695 - 1401340..1402164 (+) 825 WP_188211528.1 undecaprenyl-diphosphate phosphatase -
  BBP27_RS06700 comP 1402240..1402734 (-) 495 WP_081456519.1 type IV pilin protein Machinery gene
  BBP27_RS06705 comE 1402913..1403200 (-) 288 WP_188211820.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53761.90 Da        Isoelectric Point: 7.8335

>NTDB_id=756004 BBP27_RS06680 WP_188211525.1 1397912..1399408(+) (comM) [Neisseria sp. RH3002v2g]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLAQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGARSL
GEVAAHLNGIELLTQTECKLPRRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESIARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSAAVLERVTAARKIQYGRQGKVNAELSVSELDGKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=756004 BBP27_RS06680 WP_188211525.1 1397912..1399408(+) (comM) [Neisseria sp. RH3002v2g]
ATGTCGCTTGCTTTGGTTTACAGCCGCGCCTTAAGCGGTATGAACGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGTTTGCCCGATACCGAAGTCAAAGAAAGCCGCGACCGCGTGCGTGCCGCCATCA
TCCAAAGCGGTTTCGACTTCCCCGCCAAGAAAATTACCGTCAACCTCGCACCGGCCGACCTCCCCAAAGAATCCGGCCGT
TTCGATTTGCCTATTGCCTTAGGCATTCTTGCCGCATCGGGACAAATTAATCCTGAAAAGCTCGCGCAATATGAGTTTGC
CGGAGAATTGGCGCTGTCCGGCTTGCTGCGTCCCGTACGCGGCGCGCTGGCCATGGCATGGCAGGGAATGCAGGCCGGCC
GTTCGTTCGTCTTGCCGCAAGAAAATGCCGAACAGGCTGCCGTCATGCGCGGCATTGCGGTTTATGGCGCGCGTTCTTTG
GGCGAAGTGGCCGCCCATTTAAACGGCATCGAACTGTTGACACAAACCGAATGCAAACTGCCACGAAGGCCGTCTGAACA
AAGTAAAATACCCGACTTAGCCGATGTCAAAGGCCAACATACCGCCCGCCTCGCCTTGGAAATCGCCGCGGCAGGCGGAC
ACAGCCTGTTGATGATGGGCCCGCCGGGAACGGGCAAGTCCATGCTTTCCCAACGGCTGCCCGGCATTCTGCCGCCTTTG
ACCGAAGACGAATTGGTCGAAGTCTGGGCATTGCGTTCGCTCCTGCCCAACCATCAACAGCAACTCGACAGCAACCGTCC
TTTCCGCAGTCCCCACCACAGCGCCAGCTCGGCCGCCATGGTCGGCGGCGGTTCCGACCCGCGTCCGGGTGAAATTTCAT
TGGCGCACCACGGTGTGTTGTTTTTAGACGAATTGCCCGAGTTTGACCGTAAAGTATTGGAAGTATTGCGCGAACCTTTG
GAAAATGGCGAAATCCATATTTCCCGCGCCGCACGCCAAGCCGTTTATCCGGCCAAATTCCAGCTCGTCGCCGCCATGAA
CCCCTGCCCTTGCGGCTATCTCGGTCATCCGTCCAAACCTTGCCGCTGCACGCCTGAAAGCATCGCCCGTTACCGCAGCA
AAATTTCAGGGCCACTACTCGACCGCATTGATTTAACCATCGAAGTACCCAGCCTTTCCGCCGCCGAGCTGATGCAACAA
GAAGCCGGCGAATCCAGTGCCGCCGTATTAGAACGCGTTACCGCCGCGCGCAAAATCCAATACGGCCGACAAGGCAAAGT
TAATGCCGAATTGAGTGTCAGCGAGCTCGATGGCAAAGCCCGTATCCAAAAAGAAGCGCAAGAAGCCTTAGGAACCATGC
TCGAAAAACTGTCCCTATCCGCGCGCAGTTTCCACCGCATCATGCGCGTTGCCCGTACGCTGGCCGATTTGGCAGGCGAC
GAAGAAGTCAGTAAAACCCATGTGATGAAAGCCATCGGTTTCCGTCGCGCCCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.386

100

0.538
  comM Vibrio campbellii strain DS40M4

52.113

99.799

0.52
  comM Haemophilus influenzae Rd KW20

49.8

100

0.5
  comM Glaesserella parasuis strain SC1401

48.8

100

0.49
  comM Legionella pneumophila str. Paris

47.628

100

0.484
  comM Legionella pneumophila strain ERS1305867

47.628

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.366

100

0.44