Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   BBP27_RS06700 Genome accession   NZ_CP110721
Coordinates   1402240..1402734 (-) Length   164 a.a.
NCBI ID   WP_081456519.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1397240..1407734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS06675 - 1397578..1397898 (+) 321 WP_070849164.1 accessory factor UbiK family protein -
  BBP27_RS06680 comM 1397912..1399408 (+) 1497 WP_188211525.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BBP27_RS06685 - 1399563..1400642 (+) 1080 WP_188211526.1 SPOR domain-containing protein -
  BBP27_RS06690 dsbA1 1400654..1401295 (+) 642 WP_188211527.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  BBP27_RS06695 - 1401340..1402164 (+) 825 WP_188211528.1 undecaprenyl-diphosphate phosphatase -
  BBP27_RS06700 comP 1402240..1402734 (-) 495 WP_081456519.1 type IV pilin protein Machinery gene
  BBP27_RS06705 comE 1402913..1403200 (-) 288 WP_188211820.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17931.96 Da        Isoelectric Point: 10.0610

>NTDB_id=756006 BBP27_RS06700 WP_081456519.1 1402240..1402734(-) (comP) [Neisseria sp. RH3002v2g]
MYLKAFDGKRNGATVQRGYSLVQLLVVMLLVSILAAAAFTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=756006 BBP27_RS06700 WP_081456519.1 1402240..1402734(-) (comP) [Neisseria sp. RH3002v2g]
ATGTACTTAAAAGCATTTGACGGAAAACGGAATGGGGCAACTGTGCAGAGGGGCTACTCATTGGTACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGGCGGCTGCCTTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CGCATGCCGCGCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATGCGAAAAAGGGTAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAAGGTATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGATAGGGAAGCAGAGCCGAGGGTGCTGCGCTTGAACGAGTCGCTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGAAGGGTAGCTGTACGGACGGTGAGGAGATATTTAGGGGTAATGATGCGGAGTGTAAG
CCTTTTATGGGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

94.512

100

0.945
  comP Neisseria meningitidis 8013

51.007

90.854

0.463
  comP Neisseria gonorrhoeae MS11

51.02

89.634

0.457