Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   BBP27_RS06690 Genome accession   NZ_CP110721
Coordinates   1400654..1401295 (+) Length   213 a.a.
NCBI ID   WP_188211527.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395654..1406295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS06670 metK 1396299..1397468 (+) 1170 WP_188211524.1 methionine adenosyltransferase -
  BBP27_RS06675 - 1397578..1397898 (+) 321 WP_070849164.1 accessory factor UbiK family protein -
  BBP27_RS06680 comM 1397912..1399408 (+) 1497 WP_188211525.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BBP27_RS06685 - 1399563..1400642 (+) 1080 WP_188211526.1 SPOR domain-containing protein -
  BBP27_RS06690 dsbA1 1400654..1401295 (+) 642 WP_188211527.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  BBP27_RS06695 - 1401340..1402164 (+) 825 WP_188211528.1 undecaprenyl-diphosphate phosphatase -
  BBP27_RS06700 comP 1402240..1402734 (-) 495 WP_081456519.1 type IV pilin protein Machinery gene
  BBP27_RS06705 comE 1402913..1403200 (-) 288 WP_188211820.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23756.60 Da        Isoelectric Point: 10.0874

>NTDB_id=756005 BBP27_RS06690 WP_188211527.1 1400654..1401295(+) (dsbA1) [Neisseria sp. RH3002v2g]
MKQRMKQTIAALSLSLLSLSAQAATEGVDYTVLNRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFTAVYKQKINLADANVFRTWVSKQTSFDSKKLLQAYNSPAAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGSDWKAGMKTIDELIIKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=756005 BBP27_RS06690 WP_188211527.1 1400654..1401295(+) (dsbA1) [Neisseria sp. RH3002v2g]
ATGAAGCAGCGTATGAAACAAACTATTGCCGCACTCAGCCTGAGCCTGCTCAGTCTGAGTGCGCAGGCTGCTACCGAGGG
CGTGGACTATACCGTTCTTAATCGCCCTATCCCGCAGCAGCAAGCCGGAAAAATTGAAGTGCTAGAATTTTTTGGCTACT
TCTGCGTCCATTGTTACCATCTCGATCCAGTTTTGTTGCAACACAGCAAAACCTTCGCCAAAGATGTTTCCTTACGGACA
GAACACGTCGTTTGGATGCCTGAAATGTTGGGCTTGGCCAAAGTAGCCGCTGCCGTCAATCTTTCAGGTTTAAAATATCA
GGCCAATCCAGTCATCTTCACAGCCGTTTACAAACAGAAGATTAACTTGGCTGATGCAAATGTATTCCGCACATGGGTCA
GTAAACAGACAAGTTTTGACAGTAAAAAACTGCTTCAAGCCTATAACAGCCCTGCTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATTGTCGGTGGTAAATACAAAGTCAATTTCAACGG
TAGCGACTGGAAAGCCGGTATGAAAACCATAGACGAACTCATCATTAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

59.358

87.793

0.521
  dsbA2 Neisseria meningitidis MC58

59.016

85.915

0.507