Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OOT55_RS11410 Genome accession   NZ_CP110629
Coordinates   2631003..2633138 (-) Length   711 a.a.
NCBI ID   WP_265365997.1    Uniprot ID   -
Organism   Marinimicrobium sp. C6131     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2626003..2638138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOT55_RS11395 (OOT55_11395) - 2627714..2629285 (-) 1572 WP_265365994.1 SPOR domain-containing protein -
  OOT55_RS11400 (OOT55_11400) aroB 2629312..2630418 (-) 1107 WP_265365995.1 3-dehydroquinate synthase -
  OOT55_RS11405 (OOT55_11405) aroK 2630487..2630999 (-) 513 WP_265365996.1 shikimate kinase AroK -
  OOT55_RS11410 (OOT55_11410) pilQ 2631003..2633138 (-) 2136 WP_265365997.1 type IV pilus secretin PilQ family protein Machinery gene
  OOT55_RS11415 (OOT55_11415) - 2633175..2633708 (-) 534 WP_265365998.1 pilus assembly protein PilP -
  OOT55_RS11420 (OOT55_11420) - 2633701..2634324 (-) 624 WP_265365999.1 type 4a pilus biogenesis protein PilO -
  OOT55_RS11425 (OOT55_11425) - 2634327..2634902 (-) 576 WP_265366000.1 PilN domain-containing protein -
  OOT55_RS11430 (OOT55_11430) pilM 2634902..2635969 (-) 1068 WP_322113808.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 78000.53 Da        Isoelectric Point: 4.2091

>NTDB_id=755453 OOT55_RS11410 WP_265365997.1 2631003..2633138(-) (pilQ) [Marinimicrobium sp. C6131]
MRNLALLLVCLAPSFLWAKSLNNIQFSELPGERFEVRMDFDDVPPEPEGYTIEQPARIVLDFPEVSSALEQRRFPLSFEN
SKSALVLSSQGRTRLILNLSELTTYSARVDGNTYVLEVGAAQGGYVSRPAQATSVAGDRQSQTAPRADNEPRVTNIDFRR
GEEGEGRVIINLSDDNISADVTETAKGIELELGGVNLPEALRRRLDVVDFATPVTMVSASQDRRGTILNIDANGEYDYMA
YQADNEYVISVKPLTEREIEARDQEFSYTGDKLSLNFQDIEVRSVLQIIADFTDLNLVASDTVQGRITLRLDNVPWDQAL
DLVLKTKGLDKRQNGNVLMVAPAAEIAERERQELESRQQLEELAPLRTEYIRVRYANAREMFELFRGEEGEGGRSGGSSG
GQGGNRATGSVLSDRGDAIVDERTNSIIITDTAERIEAFKRLVEQIDIPIRQVMIEARLVIANTDFRREMGVRWGGVGFD
RSSDTLVEVAGSTAGLDSNPGSPAEWLTGSGSLDLEENMMVDLGVDNPAGSFAFSVLSDSAFIDMELSALENNGQAEIVS
QPKVITGDKQQATIMSGTEIPYQEASASGATTTAFKEAVLKLDVTPQITPDNRIIMDLVINQDSVGALNQASGIPTIDVT
EVMTKVLVQNGQTVVLGGIFQVEQVEGEDKVPFLGDIPVLGRLFKRDITSQEKRELLVFITPKIMADTLTD

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=755453 OOT55_RS11410 WP_265365997.1 2631003..2633138(-) (pilQ) [Marinimicrobium sp. C6131]
ATGCGAAATCTAGCCTTGTTACTGGTCTGTCTGGCGCCTTCGTTTTTGTGGGCCAAGTCACTGAATAACATCCAGTTCTC
GGAGCTGCCGGGGGAGCGATTCGAAGTCCGAATGGATTTCGATGACGTGCCTCCCGAGCCCGAGGGCTACACTATCGAGC
AGCCCGCGCGCATCGTGTTGGACTTCCCGGAAGTGAGCAGCGCCCTGGAACAGCGCCGTTTTCCACTGTCATTCGAGAAC
AGCAAAAGTGCCCTGGTGCTCAGTTCTCAGGGGCGCACACGCCTGATTCTGAATCTCAGTGAGCTGACCACCTACAGTGC
GCGGGTCGACGGCAATACCTACGTACTGGAGGTCGGTGCGGCCCAGGGCGGCTATGTATCCCGCCCCGCCCAGGCGACCA
GTGTGGCGGGTGACCGTCAGTCGCAAACGGCCCCGCGCGCCGACAATGAGCCTCGGGTTACCAATATTGACTTCCGCCGT
GGTGAAGAAGGTGAAGGCCGGGTGATCATCAACCTGTCCGATGACAACATCAGTGCCGATGTCACCGAGACGGCCAAAGG
CATTGAGCTTGAGCTGGGCGGGGTCAATCTGCCGGAAGCACTTCGCCGGCGCCTGGACGTGGTGGACTTTGCTACACCGG
TAACCATGGTGTCCGCCTCTCAGGATCGTCGCGGAACCATTCTGAATATCGATGCCAATGGCGAATACGACTACATGGCC
TACCAGGCCGACAATGAGTATGTCATCAGTGTGAAGCCGCTGACCGAGCGGGAAATAGAAGCGCGGGATCAGGAGTTCAG
CTATACCGGTGACAAGCTGTCGCTGAACTTCCAGGATATCGAAGTGCGCAGTGTCCTGCAGATCATTGCCGACTTTACCG
ACTTGAACCTGGTGGCCAGTGACACGGTTCAGGGCCGCATTACCCTGCGTCTGGACAATGTGCCCTGGGACCAGGCTCTG
GATCTGGTGCTCAAAACCAAGGGGTTGGACAAGCGCCAGAACGGCAATGTCCTGATGGTGGCGCCGGCGGCGGAGATCGC
CGAGCGTGAGCGTCAGGAACTCGAATCCCGTCAGCAGCTGGAAGAGCTGGCACCGCTGCGCACCGAGTACATCCGGGTCC
GCTACGCCAATGCCCGGGAAATGTTTGAACTGTTCCGCGGCGAAGAGGGTGAAGGCGGTCGTAGCGGCGGTTCGTCTGGC
GGTCAGGGGGGCAATCGCGCTACCGGCAGTGTCCTGTCCGATCGAGGGGATGCCATCGTCGATGAACGCACCAATTCGAT
CATCATTACGGATACCGCTGAACGTATCGAAGCCTTCAAGCGTCTGGTGGAGCAGATCGATATCCCGATCCGTCAGGTGA
TGATTGAGGCGCGTCTGGTGATCGCCAATACGGATTTCCGGCGCGAAATGGGTGTTCGCTGGGGTGGGGTCGGCTTTGAT
CGCTCCTCGGATACACTGGTGGAAGTGGCCGGATCCACCGCCGGTCTCGATTCCAACCCGGGTTCCCCCGCCGAGTGGCT
CACCGGTAGTGGTAGCCTCGACCTCGAAGAGAATATGATGGTAGACCTTGGGGTCGATAACCCCGCGGGCAGCTTCGCGT
TCAGCGTACTGTCCGACAGCGCCTTTATCGATATGGAATTGTCCGCTCTGGAGAACAATGGCCAGGCTGAAATCGTCTCC
CAGCCCAAGGTGATCACCGGCGACAAGCAGCAGGCGACCATCATGTCGGGTACCGAAATTCCCTACCAGGAAGCGTCGGC
CAGTGGCGCGACTACGACGGCTTTCAAAGAGGCCGTGCTGAAGCTGGATGTAACCCCCCAGATCACACCCGATAACCGGA
TCATTATGGATCTGGTGATCAATCAGGACTCGGTGGGCGCTTTGAACCAGGCGTCCGGTATTCCCACGATCGACGTGACC
GAAGTGATGACCAAGGTGCTGGTACAGAATGGCCAGACCGTCGTGCTGGGTGGTATCTTCCAGGTTGAACAGGTCGAGGG
TGAGGACAAGGTTCCGTTCCTGGGCGATATCCCGGTTCTGGGTAGACTGTTCAAGCGGGACATTACCAGTCAGGAAAAGC
GCGAGCTGCTGGTATTCATTACTCCCAAAATTATGGCTGATACCTTAACTGACTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(36-116)

Secretin and TonB N terminus short domain (STN)

(296-342)

Bacterial type II/III secretion system short domain (Secretin_N)

(369-452)

Bacterial type II and III secretion system protein (Secretin)

(549-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.257

100

0.487
  comQ Acinetobacter baylyi ADP1

41.926

99.297

0.416
  pilQ Acinetobacter baumannii D1279779

41.326

99.719

0.412
  pilQ Acinetobacter baumannii strain A118

41.326

99.719

0.412
  pilQ Legionella pneumophila strain Lp02

37.677

99.297

0.374
  pilQ Legionella pneumophila strain ERS1305867

37.857

98.453

0.373