Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OOT55_RS08740 Genome accession   NZ_CP110629
Coordinates   2025373..2026647 (+) Length   424 a.a.
NCBI ID   WP_265368705.1    Uniprot ID   -
Organism   Marinimicrobium sp. C6131     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2020373..2031647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOT55_RS08720 (OOT55_08720) - 2020788..2021294 (-) 507 WP_265368701.1 DUF6795 domain-containing protein -
  OOT55_RS08725 (OOT55_08725) - 2021625..2022137 (-) 513 WP_265368702.1 protease complex subunit PrcB family protein -
  OOT55_RS08730 (OOT55_08730) - 2022699..2023055 (-) 357 WP_416141001.1 pilin -
  OOT55_RS17850 - 2023070..2023184 (-) 115 Protein_1705 pilin -
  OOT55_RS08735 (OOT55_08735) pilB 2023640..2025367 (+) 1728 WP_265368704.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OOT55_RS08740 (OOT55_08740) pilC 2025373..2026647 (+) 1275 WP_265368705.1 type II secretion system F family protein Machinery gene
  OOT55_RS08745 (OOT55_08745) pilD 2026658..2027521 (+) 864 WP_265368809.1 prepilin peptidase Machinery gene
  OOT55_RS08750 (OOT55_08750) coaE 2027525..2028127 (+) 603 WP_265368706.1 dephospho-CoA kinase -
  OOT55_RS08755 (OOT55_08755) - 2028481..2031294 (+) 2814 WP_265368707.1 monovalent cation/H+ antiporter subunit A -
  OOT55_RS08760 (OOT55_08760) - 2031294..2031641 (+) 348 WP_265368708.1 Na+/H+ antiporter subunit C -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 46086.38 Da        Isoelectric Point: 10.0696

>NTDB_id=755450 OOT55_RS08740 WP_265368705.1 2025373..2026647(+) (pilC) [Marinimicrobium sp. C6131]
MATTAQAQKAAPTAARKKPVAKGSTSATYLYKGLDKKGNKIEGEMEGVSPALIKAQLLKQGIRANQVRKKPKPLFGGGGK
KIQPSDIAVFSRQMATMMKAGVPLVQSFDIVADGLDNARVRTLVHQIRDDVAAGGNFASALRKHPKYFDDLFCNLVEAGE
QSGALETMLDRIATYKEKTEALKAKIKKAMTYPIAVVVVAIIVTAILLIKVVPQFTQTFQSFGAELPAFTLLVMNMSDFM
REQWFIMLAIIIGSVFFFKEARRRSKAFAYAIDKYILKLPVVGNILYLSIMARFARTLSTTFAAGVPLIDALTSVAGAAG
NKPYSDAILKIREEVSTGIQLNTAIRAQKMFPTLLVQMAAIGEESGALDEMLEKVAVYYEEAVDNQVDSLTSLLEPIIMS
VLGVLVGGLLIAMYLPIFQMGSVI

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=755450 OOT55_RS08740 WP_265368705.1 2025373..2026647(+) (pilC) [Marinimicrobium sp. C6131]
ATGGCCACCACCGCCCAAGCCCAGAAAGCCGCGCCCACAGCGGCCCGCAAAAAGCCAGTCGCGAAAGGCTCCACGTCGGC
AACCTACCTCTATAAAGGCCTGGACAAAAAAGGCAATAAGATTGAGGGCGAAATGGAGGGCGTCAGTCCCGCGCTAATCA
AGGCACAACTGCTGAAGCAAGGCATTCGAGCCAATCAGGTTCGTAAAAAGCCGAAGCCCCTGTTTGGTGGTGGCGGCAAG
AAAATTCAACCGTCAGATATTGCGGTGTTTTCTCGCCAAATGGCAACAATGATGAAAGCCGGCGTTCCACTAGTGCAGTC
TTTCGATATTGTAGCCGATGGCCTAGACAACGCTCGGGTTCGAACACTGGTTCACCAAATTCGCGATGACGTAGCGGCCG
GCGGCAACTTTGCGTCCGCCTTACGTAAGCACCCCAAGTACTTTGACGATCTCTTCTGTAACTTGGTAGAAGCAGGTGAG
CAGTCAGGCGCTCTGGAAACCATGCTGGACAGAATTGCGACCTACAAAGAAAAAACAGAGGCCCTCAAAGCCAAGATAAA
GAAAGCTATGACTTACCCGATCGCGGTAGTAGTGGTCGCTATCATTGTTACCGCGATCCTTCTGATCAAAGTGGTGCCAC
AATTCACGCAGACGTTCCAAAGCTTCGGCGCCGAACTTCCCGCCTTCACACTGCTTGTCATGAATATGTCAGATTTCATG
CGAGAACAATGGTTTATAATGCTGGCCATCATTATCGGCTCGGTGTTTTTCTTCAAGGAAGCCCGACGTCGCTCCAAGGC
ATTTGCTTACGCCATTGATAAATACATTCTTAAACTTCCGGTCGTGGGGAATATACTCTACTTATCTATCATGGCACGCT
TTGCCCGCACACTCTCCACGACCTTTGCCGCTGGTGTTCCATTAATTGACGCTCTAACATCTGTCGCAGGCGCAGCAGGC
AACAAGCCATATAGCGATGCCATTTTGAAGATCCGCGAGGAAGTCTCCACCGGCATTCAGTTGAATACAGCCATTCGCGC
TCAGAAAATGTTCCCCACCTTGCTCGTTCAGATGGCTGCTATTGGCGAAGAATCTGGCGCACTTGACGAAATGCTCGAAA
AAGTGGCTGTGTATTATGAAGAAGCCGTAGACAATCAAGTCGACAGCCTGACTTCGCTCCTGGAACCCATTATCATGTCC
GTTCTTGGCGTTCTGGTCGGCGGCCTGCTGATCGCCATGTACCTGCCAATCTTCCAGATGGGGTCGGTTATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(294-416)

Type II secretion system (T2SS), protein F (T2SSF)

(90-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.764

95.047

0.616
  pilC Acinetobacter baumannii D1279779

59.36

95.755

0.568
  pilC Acinetobacter baylyi ADP1

60.202

93.632

0.564
  pilC Legionella pneumophila strain ERS1305867

57.683

93.632

0.54
  pilG Neisseria meningitidis 44/76-A

41.96

93.868

0.394
  pilG Neisseria gonorrhoeae MS11

41.96

93.868

0.394
  pilC Vibrio cholerae strain A1552

39.043

93.632

0.366