Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ONG97_RS10360 Genome accession   NZ_CP110483
Coordinates   2049339..2049839 (+) Length   166 a.a.
NCBI ID   WP_017554535.1    Uniprot ID   A0A150KHY2
Organism   Heyndrickxia coagulans strain XY2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2044339..2054839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG97_RS10335 (ONG97_10335) ribD 2045297..2046409 (+) 1113 WP_265114576.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ONG97_RS10340 (ONG97_10340) - 2046390..2047037 (+) 648 WP_265114577.1 riboflavin synthase -
  ONG97_RS10345 (ONG97_10345) - 2047055..2048248 (+) 1194 WP_265114578.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  ONG97_RS10350 (ONG97_10350) ribE 2048261..2048731 (+) 471 WP_265114579.1 6,7-dimethyl-8-ribityllumazine synthase -
  ONG97_RS10355 (ONG97_10355) rpsF 2048990..2049277 (+) 288 WP_013860885.1 30S ribosomal protein S6 -
  ONG97_RS10360 (ONG97_10360) ssbA 2049339..2049839 (+) 501 WP_017554535.1 single-stranded DNA-binding protein Machinery gene
  ONG97_RS10365 (ONG97_10365) rpsR 2049884..2050123 (+) 240 WP_013860883.1 30S ribosomal protein S18 -
  ONG97_RS10370 (ONG97_10370) - 2050275..2051222 (+) 948 WP_202622404.1 YybS family protein -
  ONG97_RS10375 (ONG97_10375) - 2051258..2053231 (+) 1974 WP_265114580.1 DHH family phosphoesterase -
  ONG97_RS10380 (ONG97_10380) rplI 2053228..2053671 (+) 444 WP_017550659.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18713.39 Da        Isoelectric Point: 4.6529

>NTDB_id=755087 ONG97_RS10360 WP_017554535.1 2049339..2049839(+) (ssbA) [Heyndrickxia coagulans strain XY2]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
NYEAQDGRRVYVTEVVAESVQFLEPRSANQERSSSQNYGNNQGNAFPGYNQDQNQNQRNQSYSKPDEDPFSNDGQPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=755087 ONG97_RS10360 WP_017554535.1 2049339..2049839(+) (ssbA) [Heyndrickxia coagulans strain XY2]
ATGTTGAACCGTGTTGTTCTCGTAGGCAGGCTGACAAAAGATCCCGATTTGCGCTATACGCCGAGCGGAGTAGCGGTTGC
TACTTTTACCCTGGCTGTAAACCGTACGTTTACCAACCAGCAGGGGGAAAGGGAAGCGGATTTCATCAATTGTGTTGTTT
GGAGAAAACAGGCTGAAAATGTGGCCAACTACTTGAAAAAAGGAAGTCTGGCAGGCGTAGACGGCCGGATTCAGACACGC
AACTACGAAGCCCAGGATGGCCGGCGCGTGTATGTCACAGAGGTCGTGGCAGAAAGTGTCCAGTTTCTTGAACCGAGAAG
CGCGAATCAGGAACGCAGCAGCAGCCAGAATTACGGGAACAACCAAGGGAATGCTTTCCCGGGGTACAACCAGGATCAAA
ACCAGAATCAGCGCAATCAAAGTTATTCAAAGCCGGATGAAGATCCGTTCTCAAATGATGGACAACCAATTGACATCTCT
GATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150KHY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.455

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

63.855

0.416
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373
  ssb Neisseria meningitidis MC58

34.857

100

0.367
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.361
  ssb Vibrio cholerae strain A1552

33.333

100

0.361